Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CONCH_RS01635 Genome accession   NZ_CP007771
Coordinates   294176..295354 (+) Length   392 a.a.
NCBI ID   WP_039668037.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus LMG 11760     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 289176..300354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CONCH_RS08015 (CONCH_0324) - 289386..290984 (+) 1599 WP_052239425.1 coiled-coil domain-containing protein -
  CONCH_RS01625 (CONCH_0325) - 290981..292150 (+) 1170 WP_039668035.1 DUF6716 putative glycosyltransferase -
  CONCH_RS01630 (CONCH_0326) - 292152..294179 (+) 2028 WP_039668036.1 capsular polysaccharide export protein -
  CONCH_RS01635 (CONCH_0327) kpsS 294176..295354 (+) 1179 WP_039668037.1 capsular polysaccharide export protein Regulator
  CONCH_RS07975 (CONCH_0328) - 295351..296859 (-) 1509 WP_039668038.1 SGNH/GDSL hydrolase family protein -
  CONCH_RS01645 (CONCH_0329) - 297022..298152 (+) 1131 WP_039668039.1 hypothetical protein -
  CONCH_RS01650 (CONCH_0330) - 298162..299535 (+) 1374 WP_039668040.1 cytochrome P450 -
  CONCH_RS01655 (CONCH_0331) - 299532..299885 (+) 354 WP_039627957.1 membrane protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46445.06 Da        Isoelectric Point: 10.1617

>NTDB_id=123199 CONCH_RS01635 WP_039668037.1 294176..295354(+) (kpsS) [Campylobacter lari subsp. concheus LMG 11760]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIAIKIPKAKIYKVNFNGGDFFFYPFKSINYTKSLAELESFYKKLFEEKQIQV
ILMYNDCRKIHEIAINVAKQMDIEVWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLSQKKFDKDFKFKTFSSTFKNM
AFASFLYWFFAFLLSWYFNNSLHHRSLKLFDFLPWFCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKTTEKFIEEVIISFANHAKAKSYLVFKHHPMDRGYRDYTKLIEDLSLKYNVEGRILYVHDLHLPTLLINARGTIVINST
VGLSALYHNSPLKVIGKAFYDIEGLTYQKSLHTFWKECRAYKPDAVLHAKFRNYVIYKTQVNGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=123199 CONCH_RS01635 WP_039668037.1 294176..295354(+) (kpsS) [Campylobacter lari subsp. concheus LMG 11760]
ATGAATTTAAGTAAGAAGTTAAAAAAATTTTCCGGTAAAAATGTTTTATTGCTCCAAGGGCCTGTGGGTGGATTTTTTCG
TAAAATTGCTATAAAAATCCCAAAAGCTAAGATTTATAAAGTAAATTTTAATGGCGGAGATTTTTTCTTTTATCCTTTTA
AAAGTATTAATTATACCAAAAGCTTAGCTGAGCTTGAAAGCTTTTATAAAAAGCTTTTTGAAGAAAAGCAAATTCAAGTT
ATTTTGATGTATAATGATTGTAGAAAAATTCATGAGATAGCCATTAATGTTGCTAAGCAAATGGATATTGAAGTATGGAT
TTTTGAAGAAGGGTATATAAGACCAAACTTCATTACTTTTGAAAAAGATGGAGTAAATGCAAACTCCACTTTACCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTGATAAAGATTTTAAATTTAAAACTTTTTCAAGTACTTTTAAAAATATG
GCTTTTGCTTCATTTTTATACTGGTTTTTTGCTTTTTTACTTTCTTGGTATTTTAATAATTCTTTACATCATAGAAGTTT
AAAATTATTTGATTTTTTACCTTGGTTTTGTTCAGTATATAGAAAAAACAAATACAAAATCACAGAAAAAAGTTTAAACG
AGAAAATTCTTTCTTTAAAACAAAAGTATTTTCTAGCTATTCTGCAAGTGCATAACGATACTCAATTGTCTCATCATTAT
AAAAAAACTACAGAAAAATTTATAGAAGAAGTGATTATCTCTTTTGCTAATCATGCCAAAGCAAAGTCTTATCTAGTTTT
TAAGCATCATCCTATGGATCGTGGTTATAGAGACTATACTAAGCTTATAGAAGATTTGAGTTTAAAATATAATGTTGAGG
GTAGAATTTTATATGTACATGACTTGCATTTGCCTACACTTTTGATCAATGCAAGAGGTACTATAGTTATAAATAGCACA
GTAGGACTTTCTGCTTTATATCATAATAGTCCTTTAAAGGTTATAGGAAAAGCCTTTTATGATATAGAAGGTTTGACTTA
TCAAAAAAGCTTGCATACTTTTTGGAAAGAATGCAGAGCATATAAACCTGATGCGGTTTTACATGCTAAATTTAGAAATT
ATGTAATATATAAAACCCAAGTCAATGGAAATTTCTTCAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.532

100

0.63

Multiple sequence alignment