Detailed information
Bioinformatically predicted
Overview
| Name | ctsD | Type | Machinery gene |
| Locus tag | CAQ16704_RS02015 | Genome accession | NZ_CP007769 |
| Coordinates | 378405..379793 (+) | Length | 462 a.a. |
| NCBI ID | WP_039666665.1 | Uniprot ID | A0A0A8GVI8 |
| Organism | Campylobacter sp. RM16704 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 373405..384793
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CAQ16704_RS02000 (CAQ16704_0400) | - | 373791..374435 (+) | 645 | WP_039666662.1 | HAD family hydrolase | - |
| CAQ16704_RS02005 (CAQ16704_0401) | nifJ | 374553..378107 (+) | 3555 | WP_039666663.1 | pyruvate:ferredoxin (flavodoxin) oxidoreductase | - |
| CAQ16704_RS02010 (CAQ16704_0402) | - | 378128..378433 (+) | 306 | WP_148308466.1 | hypothetical protein | - |
| CAQ16704_RS02015 (CAQ16704_0403) | ctsD | 378405..379793 (+) | 1389 | WP_039666665.1 | pilus (MSHA type) biogenesis protein MshL | Machinery gene |
| CAQ16704_RS02020 (CAQ16704_0404) | - | 379774..380103 (+) | 330 | WP_039666666.1 | transformation system, membrane protein CtsX | - |
| CAQ16704_RS02025 (CAQ16704_0405) | - | 380096..381643 (+) | 1548 | WP_039666667.1 | transformation system, type II secretion system ATPase CtsE | - |
| CAQ16704_RS02030 (CAQ16704_0406) | - | 381640..382806 (+) | 1167 | WP_039666668.1 | transformation system, type II secretion system membrane protein CtsF | - |
| CAQ16704_RS02035 (CAQ16704_0407) | - | 382796..382978 (-) | 183 | WP_039666669.1 | hypothetical protein | - |
| CAQ16704_RS07955 (CAQ16704_0408) | - | 383103..384326 (+) | 1224 | WP_052244969.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 462 a.a. Molecular weight: 52615.59 Da Isoelectric Point: 7.9089
>NTDB_id=123165 CAQ16704_RS02015 WP_039666665.1 378405..379793(+) (ctsD) [Campylobacter sp. RM16704]
MIKIIFLFISFFIFTNASIIQCNQRVFDISIENKTSLLEVLNELGRECGFSIIIKDLIAKEKLDSKQNYLHIRKMTLKEI
FNLLLKENNLAYEYERNILKVYGKKIKTFKVHYISSIREGQSITKASVDSRPRQGDYDNTKEADNLVISTDKFDFWEKIA
EEIQALLDEKTNKPIINTNAGIITLNATPYELARVEKYLYDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNS
DDDFIINKGGIRNINLKANIETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISETF
NNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNYRQNKPRDIAPDTIQKKLSTVVEVEDGQTLILGGLISKNT
ISNHNEISALSKIPLFGFLFQGKQNLEDTSEIVFIIKPSLIKADKKILSLKELGFEHEDNIF
MIKIIFLFISFFIFTNASIIQCNQRVFDISIENKTSLLEVLNELGRECGFSIIIKDLIAKEKLDSKQNYLHIRKMTLKEI
FNLLLKENNLAYEYERNILKVYGKKIKTFKVHYISSIREGQSITKASVDSRPRQGDYDNTKEADNLVISTDKFDFWEKIA
EEIQALLDEKTNKPIINTNAGIITLNATPYELARVEKYLYDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNS
DDDFIINKGGIRNINLKANIETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISETF
NNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNYRQNKPRDIAPDTIQKKLSTVVEVEDGQTLILGGLISKNT
ISNHNEISALSKIPLFGFLFQGKQNLEDTSEIVFIIKPSLIKADKKILSLKELGFEHEDNIF
Nucleotide
Download Length: 1389 bp
>NTDB_id=123165 CAQ16704_RS02015 WP_039666665.1 378405..379793(+) (ctsD) [Campylobacter sp. RM16704]
ATGATAAAAATAATATTTTTGTTTATTAGTTTTTTTATTTTTACAAATGCTTCAATAATTCAATGCAATCAACGTGTTTT
TGATATAAGTATTGAAAATAAAACTTCTTTACTTGAAGTTTTGAATGAGCTTGGTAGAGAATGCGGTTTTAGTATTATTA
TAAAAGATTTAATAGCTAAAGAAAAATTAGATAGCAAGCAAAACTATTTACATATAAGAAAAATGACTTTAAAAGAAATT
TTTAATTTGCTATTAAAAGAAAATAATCTTGCTTATGAATACGAAAGAAATATTTTAAAAGTTTATGGAAAAAAAATAAA
AACTTTTAAAGTTCACTATATAAGTTCTATTAGAGAAGGGCAAAGTATTACCAAGGCTTCGGTAGATTCAAGACCTAGGC
AAGGAGATTATGATAATACTAAAGAAGCAGATAATTTAGTGATAAGTACAGACAAATTTGATTTTTGGGAAAAAATAGCT
GAAGAAATTCAAGCTTTATTGGATGAAAAAACAAATAAGCCTATTATTAACACTAATGCAGGAATTATAACATTAAATGC
AACACCATACGAACTTGCGAGAGTTGAAAAATATCTATATGATTTAAATAAAAGACTTAAAAAACAAGTATTAATTGATG
TAAGTATTGTTGCGGTGCATTTAAATAAAAGTCATTCTAGCGGAATTAACTGGCAAGAACTTGCTTTTAAACTTAACAGT
GATGATGATTTTATTATAAATAAGGGTGGAATCAGGAATATTAATTTAAAAGCCAATATAGAAACAAAGGCTATTTTAAA
TTTATTACAAGAAAATGGAAAAACAACCGTACTTTCAAATCCAAAACTTATGGCTTTAAATAATCAACAAGCTATTATTT
CCATAGGAGATACAATAAATTATCAAGTAAAAGAAAGTTCTAAAGGAACTGAAAATGGGACAACTATTAGTGAGACTTTT
AATAATTATTCTATTTTTGTAGGGATATTACTTAATATTTTGCCAGAGATTTCAGATGATCATAAAATTATGCTTAGGAT
TAATCCAAGTTTGAGTGATTTTAAATATAGTGTAGATAATTATCGTCAAAATAAACCTAGAGATATTGCACCTGATACTA
TACAAAAAAAGCTTTCAACTGTAGTAGAAGTTGAAGATGGACAAACCTTAATTTTAGGTGGATTAATTAGTAAAAATACT
ATTAGTAATCATAATGAAATCAGTGCTTTATCTAAAATACCACTTTTTGGTTTTTTGTTTCAGGGAAAACAGAATTTAGA
AGATACTAGTGAAATAGTTTTTATTATTAAACCAAGTTTAATAAAAGCTGATAAAAAAATTTTAAGTTTAAAAGAATTGG
GTTTTGAACATGAAGATAATATATTTTAA
ATGATAAAAATAATATTTTTGTTTATTAGTTTTTTTATTTTTACAAATGCTTCAATAATTCAATGCAATCAACGTGTTTT
TGATATAAGTATTGAAAATAAAACTTCTTTACTTGAAGTTTTGAATGAGCTTGGTAGAGAATGCGGTTTTAGTATTATTA
TAAAAGATTTAATAGCTAAAGAAAAATTAGATAGCAAGCAAAACTATTTACATATAAGAAAAATGACTTTAAAAGAAATT
TTTAATTTGCTATTAAAAGAAAATAATCTTGCTTATGAATACGAAAGAAATATTTTAAAAGTTTATGGAAAAAAAATAAA
AACTTTTAAAGTTCACTATATAAGTTCTATTAGAGAAGGGCAAAGTATTACCAAGGCTTCGGTAGATTCAAGACCTAGGC
AAGGAGATTATGATAATACTAAAGAAGCAGATAATTTAGTGATAAGTACAGACAAATTTGATTTTTGGGAAAAAATAGCT
GAAGAAATTCAAGCTTTATTGGATGAAAAAACAAATAAGCCTATTATTAACACTAATGCAGGAATTATAACATTAAATGC
AACACCATACGAACTTGCGAGAGTTGAAAAATATCTATATGATTTAAATAAAAGACTTAAAAAACAAGTATTAATTGATG
TAAGTATTGTTGCGGTGCATTTAAATAAAAGTCATTCTAGCGGAATTAACTGGCAAGAACTTGCTTTTAAACTTAACAGT
GATGATGATTTTATTATAAATAAGGGTGGAATCAGGAATATTAATTTAAAAGCCAATATAGAAACAAAGGCTATTTTAAA
TTTATTACAAGAAAATGGAAAAACAACCGTACTTTCAAATCCAAAACTTATGGCTTTAAATAATCAACAAGCTATTATTT
CCATAGGAGATACAATAAATTATCAAGTAAAAGAAAGTTCTAAAGGAACTGAAAATGGGACAACTATTAGTGAGACTTTT
AATAATTATTCTATTTTTGTAGGGATATTACTTAATATTTTGCCAGAGATTTCAGATGATCATAAAATTATGCTTAGGAT
TAATCCAAGTTTGAGTGATTTTAAATATAGTGTAGATAATTATCGTCAAAATAAACCTAGAGATATTGCACCTGATACTA
TACAAAAAAAGCTTTCAACTGTAGTAGAAGTTGAAGATGGACAAACCTTAATTTTAGGTGGATTAATTAGTAAAAATACT
ATTAGTAATCATAATGAAATCAGTGCTTTATCTAAAATACCACTTTTTGGTTTTTTGTTTCAGGGAAAACAGAATTTAGA
AGATACTAGTGAAATAGTTTTTATTATTAAACCAAGTTTAATAAAAGCTGATAAAAAAATTTTAAGTTTAAAAGAATTGG
GTTTTGAACATGAAGATAATATATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsD | Campylobacter jejuni subsp. jejuni 81-176 |
57.537 |
100 |
0.587 |