Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CAQ16704_RS01620 Genome accession   NZ_CP007769
Coordinates   294239..295417 (+) Length   392 a.a.
NCBI ID   WP_039666603.1    Uniprot ID   -
Organism   Campylobacter sp. RM16704     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 289239..300417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAQ16704_RS01605 (CAQ16704_0322) cysC 290021..290602 (+) 582 WP_039666600.1 adenylyl-sulfate kinase -
  CAQ16704_RS08330 (CAQ16704_0323) - 290603..292135 (+) 1533 WP_039666601.1 hypothetical protein -
  CAQ16704_RS01615 (CAQ16704_0324) - 292215..294242 (+) 2028 WP_039666602.1 capsular polysaccharide export protein -
  CAQ16704_RS01620 (CAQ16704_0325) kpsS 294239..295417 (+) 1179 WP_039666603.1 capsular polysaccharide export protein Regulator
  CAQ16704_RS08335 (CAQ16704_0326) - 295414..296940 (-) 1527 WP_052244961.1 SGNH/GDSL hydrolase family protein -
  CAQ16704_RS01630 (CAQ16704_0327) - 297101..298237 (+) 1137 WP_039666604.1 hypothetical protein -
  CAQ16704_RS01635 (CAQ16704_0328) - 298247..299614 (+) 1368 WP_039666605.1 cytochrome P450 -
  CAQ16704_RS01640 (CAQ16704_0329) - 299617..299970 (+) 354 WP_039666606.1 membrane protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46400.98 Da        Isoelectric Point: 10.1622

>NTDB_id=123164 CAQ16704_RS01620 WP_039666603.1 294239..295417(+) (kpsS) [Campylobacter sp. RM16704]
MKLSKKLKNFSGKNVLLLQGPVGSFFRKIATKIPKAKVYKVNFNGGDFFFYPFKSINYTKSLAELEDFYKKLFEEKQIQI
IIMYNDCRKVHEIAINVARQMGIEVWIFEEGYIRPNFITFEKDGVNANSSLPRSKEFYLSQKKFDKDYKIKTFSNTFRNM
AFTSFLYWLFAFLFSWYFNNSLHHRSLKLFDFLPWLCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKTTEKFIEEVIVSFANHAKAKSYLVFKHHPMDRGYRDYTKLIEDLSLKYNVEGRILYVHDLHLPILLINARGTIVINST
VGLSALYHNSPLKVMGKAFYDIEGLTYQKSLHTFWKECRAYKPDVVLHTKFRNYVIYKTQINGSFFTSTGLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=123164 CAQ16704_RS01620 WP_039666603.1 294239..295417(+) (kpsS) [Campylobacter sp. RM16704]
ATGAAATTAAGTAAGAAATTAAAAAATTTTTCTGGTAAAAATGTTTTATTACTCCAAGGACCTGTGGGAAGTTTTTTCCG
TAAAATTGCCACAAAAATCCCAAAAGCTAAGGTTTATAAAGTAAATTTTAATGGTGGAGATTTTTTCTTTTATCCTTTTA
AAAGCATTAATTATACTAAAAGCTTAGCTGAGCTTGAAGATTTTTATAAAAAGCTTTTTGAAGAAAAACAAATTCAAATT
ATCATTATGTATAATGATTGTAGAAAGGTGCATGAAATAGCCATTAATGTAGCTAGGCAAATGGGTATTGAAGTGTGGAT
TTTTGAAGAAGGTTATATAAGACCAAATTTTATTACTTTTGAAAAAGATGGAGTTAATGCAAACTCTAGCTTGCCAAGAA
GCAAAGAATTTTATTTAAGTCAGAAAAAATTTGACAAAGATTATAAAATTAAAACTTTTTCAAATACTTTTAGAAATATG
GCTTTTACTTCATTTTTATATTGGCTTTTTGCCTTTTTATTTTCTTGGTATTTTAATAATTCTTTGCACCATAGAAGTTT
AAAATTATTTGACTTTTTACCCTGGCTTTGCTCGGTGTATAGAAAAAATAAATATAAAATCACAGAAAAAAGTTTAAATG
AAAAAATTCTTTCTTTAAAACAAAAGTATTTTTTGGCTATCTTGCAAGTGCATAATGATACTCAACTGTCTCATCATTAT
AAAAAAACTACAGAAAAATTTATAGAAGAAGTGATTGTTTCTTTTGCTAATCATGCTAAGGCAAAGTCTTATTTGGTTTT
TAAACATCATCCTATGGATCGTGGTTATAGAGATTACACTAAACTTATAGAGGATTTGAGTTTAAAATATAATGTCGAGG
GTAGAATTTTATATGTACATGATTTGCATTTGCCTATACTTTTAATCAATGCAAGAGGTACTATAGTTATAAATAGTACA
GTAGGACTTTCTGCTTTATATCACAATAGTCCTTTAAAAGTTATGGGAAAAGCATTTTATGATATAGAAGGTTTGACTTA
TCAAAAAAGTTTACATACTTTTTGGAAAGAATGTAGAGCATATAAACCTGATGTAGTTTTACATACTAAATTTAGAAATT
ATGTGATATATAAAACTCAAATCAATGGAAGTTTTTTTACAAGTACTGGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.266

100

0.617

Multiple sequence alignment