Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CPEL_RS06760 Genome accession   NZ_CP007766
Coordinates   1382031..1382951 (-) Length   306 a.a.
NCBI ID   WP_044599169.1    Uniprot ID   -
Organism   Campylobacter peloridis LMG 23910     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1376211..1397953 1382031..1382951 within 0


Gene organization within MGE regions


Location: 1376211..1397953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPEL_RS06730 (CPEL_1336) - 1376211..1377368 (+) 1158 WP_044599163.1 peptidoglycan DD-metalloendopeptidase family protein -
  CPEL_RS06735 (CPEL_1337) mgtE 1377370..1378713 (+) 1344 WP_044599164.1 magnesium transporter -
  CPEL_RS06740 (CPEL_1338) tpx 1378723..1379241 (+) 519 WP_044599165.1 thiol peroxidase -
  CPEL_RS06745 (CPEL_1339) - 1379238..1380626 (-) 1389 WP_044599166.1 replicative DNA helicase -
  CPEL_RS06750 (CPEL_1340) cysK 1380636..1381538 (-) 903 WP_044599167.1 cysteine synthase A -
  CPEL_RS06755 (CPEL_1341) - 1381640..1381942 (-) 303 WP_044599168.1 HU family DNA-binding protein -
  CPEL_RS06760 (CPEL_1342) waaF 1382031..1382951 (-) 921 WP_044599169.1 lipopolysaccharide heptosyltransferase II Regulator
  CPEL_RS06765 (CPEL_1343) - 1383002..1383829 (+) 828 WP_044599170.1 glycosyltransferase family 2 protein -
  CPEL_RS06770 (CPEL_1344) - 1383810..1384673 (+) 864 WP_044599171.1 glycosyltransferase -
  CPEL_RS06775 (CPEL_1345) - 1384670..1385788 (-) 1119 WP_044599172.1 glycosyltransferase family 4 protein -
  CPEL_RS06780 (CPEL_1346) - 1385854..1386798 (+) 945 WP_044599173.1 glycosyltransferase family 2 protein -
  CPEL_RS06785 (CPEL_1347) - 1386834..1387022 (+) 189 WP_044599174.1 hypothetical protein -
  CPEL_RS06790 (CPEL_1348) - 1387538..1388710 (-) 1173 WP_044599175.1 glycosyltransferase family 2 protein -
  CPEL_RS06795 (CPEL_1349) - 1388768..1389763 (+) 996 WP_044599176.1 capsular polysaccharide synthesis protein -
  CPEL_RS06800 (CPEL_1350) - 1389747..1390920 (-) 1174 Protein_1328 glycosyltransferase family 2 protein -
  CPEL_RS06805 (CPEL_1351) - 1390924..1392471 (-) 1548 WP_044599178.1 glycosyltransferase family 2 protein -
  CPEL_RS06810 (CPEL_1352) - 1392480..1393352 (-) 873 WP_044599179.1 lipid A biosynthesis lauroyl acyltransferase -
  CPEL_RS06815 (CPEL_1353) waaC 1393349..1394368 (-) 1020 WP_044599180.1 lipopolysaccharide heptosyltransferase I -
  CPEL_RS06820 (CPEL_1354) - 1394435..1395214 (+) 780 WP_044599181.1 3'-5' exonuclease -
  CPEL_RS06825 (CPEL_1355) galE 1395273..1396259 (+) 987 WP_044599182.1 UDP-glucose 4-epimerase GalE -
  CPEL_RS06830 (CPEL_1356) - 1396253..1397953 (+) 1701 WP_044599583.1 flippase -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34697.97 Da        Isoelectric Point: 10.3366

>NTDB_id=123157 CPEL_RS06760 WP_044599169.1 1382031..1382951(-) (waaF) [Campylobacter peloridis LMG 23910]
MNIFINLPTWLGDSVMASAAIYAIKEKYPEAKFMFYGSFVSTELFKRFENAQVLVENKKQRYKQILQARKSLGEFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNTLKEEHQVLKYLNFIEKALNFKATSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHKILIFGVKSEREICDSIENLLLKDGIKAKNLCGKTSIFTLCKNISMLDLLITNDSGPMHIGAVY
GVKTIAIFGSTKFSQTSPWQENATIAHLNLACMPCMQKICPLKHHKCMKDLKPAMVINLAKELQKI

Nucleotide


Download         Length: 921 bp        

>NTDB_id=123157 CPEL_RS06760 WP_044599169.1 1382031..1382951(-) (waaF) [Campylobacter peloridis LMG 23910]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGAGATAGCGTTATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATACCCCGAAGCTAAATTTATGTTTTATGGTTCTTTTGTAAGCACAGAGCTTTTTAAACGCTTTGAAAACGCCCAAGTTT
TAGTGGAAAATAAAAAACAAAGATACAAGCAAATTTTGCAAGCTAGAAAAAGCCTTGGTGAATTTGATTTAGCTTTTTCG
TTTCGCTCGGCATTTTCAAGTAAGATTATCTTAAATTTAATCAAAGCCAAAAAAAGATTTTATTTTGACAAAAACACTTT
AAAAGAAGAACATCAAGTCTTAAAATACTTAAATTTCATAGAAAAAGCCTTAAATTTTAAAGCCACTTCAAATGCTTTAA
AACTCCCTATTAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGCGCACATTTTGGAAGTGCAAAAAGATGG
GAAGCAAGTTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCAACTCATAAAATTTTAATCTTTGGAGTAAAAAGTGAGAG
AGAAATTTGCGATAGCATAGAAAATTTATTATTAAAAGATGGTATAAAAGCTAAAAATTTATGCGGAAAAACCAGCATTT
TTACTCTTTGTAAAAATATATCTATGCTTGATTTACTCATCACAAATGATAGCGGGCCTATGCATATAGGTGCAGTTTAT
GGGGTAAAAACCATAGCTATTTTTGGCTCGACTAAATTCAGCCAAACATCACCTTGGCAAGAAAATGCTACAATAGCGCA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAAATTTGTCCTTTAAAACATCATAAATGCATGAAAGATTTAAAACCTG
CTATGGTGATAAATTTAGCAAAAGAATTGCAAAAAATATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.444

100

0.663

Multiple sequence alignment