Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   CPEL_RS03015 Genome accession   NZ_CP007766
Coordinates   608142..609935 (-) Length   597 a.a.
NCBI ID   WP_044598563.1    Uniprot ID   -
Organism   Campylobacter peloridis LMG 23910     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 603142..614935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPEL_RS02990 (CPEL_0594) - 603648..604430 (+) 783 WP_044598558.1 shikimate dehydrogenase -
  CPEL_RS02995 (CPEL_0595) dnaJ 604427..605545 (-) 1119 WP_044598559.1 molecular chaperone DnaJ -
  CPEL_RS03000 (CPEL_0596) - 605666..606337 (+) 672 WP_044598560.1 response regulator transcription factor -
  CPEL_RS03005 (CPEL_0597) - 606334..607569 (+) 1236 WP_044598561.1 ArsS family sensor histidine kinase -
  CPEL_RS03010 (CPEL_0598) recR 607566..608135 (+) 570 WP_044598562.1 recombination mediator RecR -
  CPEL_RS03015 (CPEL_0599) uvrC 608142..609935 (-) 1794 WP_044598563.1 excinuclease ABC subunit UvrC Machinery gene
  CPEL_RS03020 (CPEL_0600) - 609922..610257 (-) 336 WP_049984574.1 hypothetical protein -
  CPEL_RS03025 (CPEL_0601) - 610327..610512 (+) 186 WP_044598565.1 hypothetical protein -
  CPEL_RS03030 (CPEL_0602) nhaD 610509..611867 (+) 1359 WP_044598566.1 sodium:proton antiporter NhaD -
  CPEL_RS03035 (CPEL_0603) guaA 611877..613412 (+) 1536 WP_044598567.1 glutamine-hydrolyzing GMP synthase -
  CPEL_RS03040 (CPEL_0604) - 613413..613964 (-) 552 WP_044598568.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 69658.60 Da        Isoelectric Point: 9.7969

>NTDB_id=123149 CPEL_RS03015 WP_044598563.1 608142..609935(-) (uvrC) [Campylobacter peloridis LMG 23910]
MLENELKNLPNLPGIYQYFDEHGKLLYIGKAKNLKNRIRSYFSFTPKLCPNSKNSLRIQKMISQTHHVEFITTKNEADAL
ILENSFIKQLHPKYNILLRDDKTYPYIYIDLNEEYPRFEITRKIIKKNKIKYFGPFFKGAKELLNALYLTFKLKQKKSCK
KSCLFYQIQRCTAPCEGKISQVEYSKIVHKAIQALLNPSYLIKNLEQKMLDYAKNENFEEAATIRDQIQTIQDISVKIRI
DLAKLENFDVFAICIEQNILSMVRFVINSGKVISSNHKVLVLKEESECGFNEIYKQYILENYTQESPVNSTHIYIHKEFE
DMKILEDLLSQRFNKKFTIKVPKIGEKKEICQLAIQNAQINIQKYLKNENYLFLSEFQKYFNLQNFPNHIEIFDNSHLQG
EANVGALVSYKNDKFDKNSYRHYHLTHKNDYEQMQQTLTKRALSFDKNPPPDLWIIDGGYALLKLANDIIKSSGANIDII
AISKEKIDAKAHRAKGSAKDKIHTINGVITLSPSDKKLQFIQKLRDEAHRFAISFHQKTKRNQNLKNSRLIKLGISQGNI
KKLLDYYGSFDNITNADFDELKIICNAKIAKLIKENL

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=123149 CPEL_RS03015 WP_044598563.1 608142..609935(-) (uvrC) [Campylobacter peloridis LMG 23910]
ATGCTAGAAAATGAACTTAAAAATCTACCAAATTTACCAGGAATTTATCAGTATTTTGATGAGCATGGAAAATTATTATA
CATAGGAAAAGCTAAAAACTTAAAAAATCGCATTCGAAGTTATTTCAGCTTTACACCAAAACTTTGCCCAAATTCCAAAA
ATAGTCTTAGAATTCAAAAAATGATTAGCCAAACTCATCATGTAGAATTTATTACAACTAAAAATGAAGCTGATGCCCTA
ATTTTAGAAAATTCTTTTATAAAACAACTGCATCCTAAATATAATATTTTATTAAGAGATGATAAAACTTATCCTTATAT
ATACATTGACTTAAACGAAGAATACCCAAGGTTTGAAATAACAAGAAAAATCATTAAAAAAAATAAAATAAAATATTTTG
GGCCTTTTTTTAAAGGTGCAAAAGAGCTTTTAAATGCCTTATATTTAACATTCAAGCTAAAACAAAAAAAATCTTGCAAG
AAATCATGTTTATTTTACCAAATACAAAGATGCACAGCACCTTGTGAAGGAAAAATATCCCAAGTAGAATATAGTAAAAT
TGTTCATAAAGCCATACAAGCACTTTTAAATCCATCTTATTTAATAAAAAATTTAGAACAAAAAATGCTTGATTATGCTA
AAAATGAAAATTTTGAAGAAGCTGCAACAATAAGAGATCAAATTCAAACAATTCAAGACATCAGTGTTAAAATACGAATT
GACCTAGCAAAACTTGAAAATTTTGATGTTTTTGCTATATGTATAGAGCAAAATATACTCTCCATGGTGCGTTTTGTTAT
AAATAGTGGAAAGGTTATTAGTTCTAATCATAAAGTCTTAGTATTAAAAGAAGAAAGTGAGTGTGGTTTTAATGAAATTT
ATAAACAATATATTTTAGAAAACTATACACAAGAAAGTCCTGTAAATTCTACACATATTTATATACATAAAGAATTTGAA
GATATGAAAATACTAGAAGATTTATTAAGTCAAAGATTCAATAAAAAATTTACTATTAAAGTTCCTAAGATAGGTGAAAA
AAAAGAAATTTGCCAATTAGCTATACAAAATGCACAAATTAACATTCAAAAATACCTAAAAAACGAAAATTACTTATTTT
TAAGCGAATTTCAAAAATACTTTAATTTACAAAATTTCCCAAATCATATAGAAATTTTTGATAATTCTCATTTACAAGGA
GAAGCAAATGTAGGGGCTTTAGTTTCTTATAAAAATGATAAATTTGATAAAAACTCTTATAGACATTATCATTTAACACA
TAAAAATGATTATGAGCAAATGCAACAAACCCTTACTAAAAGAGCTTTATCATTTGATAAAAATCCGCCTCCTGATTTAT
GGATTATTGATGGTGGCTATGCTTTATTAAAACTAGCAAATGATATCATTAAAAGTTCTGGTGCTAATATAGATATAATA
GCCATATCCAAAGAAAAAATAGACGCCAAAGCACATAGAGCAAAAGGAAGTGCCAAGGATAAAATACACACTATTAATGG
GGTAATTACCTTATCTCCTAGTGATAAAAAATTACAATTTATACAAAAACTACGCGATGAGGCACATCGCTTTGCAATAA
GCTTCCATCAAAAAACAAAAAGAAACCAAAATTTGAAAAATTCAAGACTCATTAAACTTGGAATTTCTCAAGGTAATATC
AAAAAACTTTTAGATTACTATGGCAGTTTTGATAATATAACTAATGCAGATTTTGATGAATTAAAAATAATTTGTAATGC
AAAAATTGCAAAATTAATCAAAGAAAATTTGTAG

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(13-95)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(378-533)

UvrB/uvrC motif (UVR)

(201-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

48.667

100

0.489

Multiple sequence alignment