Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   CJM129_RS07850 Genome accession   NZ_CP007749
Coordinates   1518246..1518557 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni subsp. jejuni M129     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1513246..1523557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJM129_RS07830 (CJM129_7565) ctsE 1514115..1515674 (-) 1560 WP_032600597.1 GspE/PulE family protein Machinery gene
  CJM129_RS07835 (CJM129_7570) ctsX 1515664..1516251 (-) 588 WP_002851370.1 membrane protein Machinery gene
  CJM129_RS07840 (CJM129_7575) ctsP 1516255..1516863 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  CJM129_RS07845 (CJM129_7580) ctsD 1516856..1518268 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CJM129_RS07850 (CJM129_7585) ctsR 1518246..1518557 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  CJM129_RS07855 (CJM129_7590) nifJ 1518581..1522141 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CJM129_RS07860 (CJM129_7595) - 1522233..1522874 (-) 642 WP_002858866.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=123093 CJM129_RS07850 WP_002855438.1 1518246..1518557(-) (ctsR) [Campylobacter jejuni subsp. jejuni M129]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=123093 CJM129_RS07850 WP_002855438.1 1518246..1518557(-) (ctsR) [Campylobacter jejuni subsp. jejuni M129]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment