Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BMMGA3_RS10935 Genome accession   NZ_CP007739
Coordinates   2259845..2261536 (-) Length   563 a.a.
NCBI ID   WP_004435553.1    Uniprot ID   I3EAB0
Organism   Bacillus methanolicus MGA3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2254845..2266536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMMGA3_RS10915 (BMMGA3_11355) - 2256140..2256409 (+) 270 WP_004435547.1 DUF2627 domain-containing protein -
  BMMGA3_RS10920 (BMMGA3_11360) - 2256468..2257199 (-) 732 WP_004435549.1 glycerophosphodiester phosphodiesterase -
  BMMGA3_RS10925 (BMMGA3_11365) spo0A 2257352..2258143 (-) 792 WP_004435551.1 sporulation transcription factor Spo0A Regulator
  BMMGA3_RS10930 (BMMGA3_11370) spoIVB 2258431..2259729 (-) 1299 WP_004435552.1 SpoIVB peptidase -
  BMMGA3_RS10935 (BMMGA3_11375) recN 2259845..2261536 (-) 1692 WP_004435553.1 DNA repair protein RecN Machinery gene
  BMMGA3_RS10940 (BMMGA3_11380) ahrC 2261553..2262002 (-) 450 WP_004435554.1 transcriptional regulator AhrC/ArgR -
  BMMGA3_RS10945 (BMMGA3_11385) - 2262225..2263067 (-) 843 WP_004435555.1 TlyA family RNA methyltransferase -
  BMMGA3_RS10950 (BMMGA3_11390) dxs 2263071..2264966 (-) 1896 WP_004435556.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BMMGA3_RS10955 (BMMGA3_11395) - 2265165..2266055 (-) 891 WP_004435557.1 polyprenyl synthetase family protein -
  BMMGA3_RS10960 (BMMGA3_11400) - 2266058..2266288 (-) 231 WP_034669383.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63514.58 Da        Isoelectric Point: 4.8504

>NTDB_id=123003 BMMGA3_RS10935 WP_004435553.1 2259845..2261536(-) (recN) [Bacillus methanolicus MGA3]
MLSELSIRNFAIIDALSISFEKGLTVLTGETGAGKSIIIDAIHLLIGGRGSSEFVRHGEDKAEIEGLFLLDDESHPCYEK
AREFGIEIEEGMIVLKRDISKQGKSVCRINGKLVTISVLREVGSTLVDIHGQHEHQELMDETMHLPLLDQFGAEEISKAV
EEYQEVYRAYEKTMKKLKSLNENEQQMAHRLDLIQFQLEEIQSAQLKLNEDEELYEEKRKLSNFERIYEALQLGYSALQG
EQKGLDWLGLVMSNLEDAAELNPAYKDLFETVSNSYYALEDVSHTLRNELDLLEFDPQRLNEIEDRLNEINALKRKYGKT
IEEILEYAATIEEEVETLQNKETHIGQLEKELASLKKDLLIEAKNLTELRKKYAKKLTKLIHQELKDLYMAKTVFEVKIE
SDENNFTKNGIDKAEFYISTNPGEPLKPLSKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIY
KVSIGSQVLCISHLPQVAAMADTHLFISKVTKAGRTITSVTPLSDVEKIKEIGRMISGVEITDLTKKHAEELLLLANQIK
TAT

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=123003 BMMGA3_RS10935 WP_004435553.1 2259845..2261536(-) (recN) [Bacillus methanolicus MGA3]
TTGTTAAGCGAACTATCCATTCGAAATTTTGCAATTATAGACGCCCTTTCTATTTCTTTTGAAAAGGGTTTAACCGTTTT
AACGGGAGAGACGGGGGCAGGTAAATCGATTATCATCGATGCCATTCATTTGTTAATTGGCGGAAGAGGGTCATCTGAAT
TTGTCCGCCACGGGGAAGATAAAGCAGAAATTGAAGGTCTATTTTTGTTGGATGATGAAAGCCATCCGTGCTATGAAAAA
GCAAGAGAATTCGGCATTGAAATTGAAGAAGGCATGATCGTTTTAAAACGGGACATTTCGAAGCAGGGAAAAAGTGTATG
CCGAATAAACGGGAAATTGGTCACGATTTCTGTGTTGCGGGAAGTTGGAAGCACCTTAGTTGATATTCATGGCCAGCATG
AACATCAGGAATTAATGGACGAAACTATGCATTTGCCTTTGCTGGATCAATTTGGAGCAGAGGAAATTTCCAAAGCGGTT
GAGGAATATCAGGAAGTTTACCGGGCTTATGAGAAAACAATGAAAAAACTGAAAAGCCTGAATGAAAATGAACAGCAAAT
GGCTCACCGTCTTGACTTAATTCAATTTCAGTTAGAGGAAATTCAGTCTGCCCAACTCAAACTGAATGAAGATGAAGAGC
TTTACGAAGAAAAACGAAAACTCAGCAATTTTGAACGAATATATGAAGCACTGCAATTAGGCTATTCAGCACTTCAAGGA
GAACAAAAAGGTTTGGATTGGCTCGGCCTAGTGATGAGCAATCTTGAAGATGCTGCTGAATTGAATCCTGCTTACAAGGA
CCTATTTGAAACAGTTTCCAACAGTTATTATGCGCTTGAAGATGTTTCCCATACACTTAGAAATGAACTTGATTTGCTTG
AATTTGATCCTCAGCGTTTAAATGAAATTGAAGACAGGCTCAATGAAATCAATGCGTTAAAACGGAAATACGGAAAAACA
ATCGAAGAAATACTTGAATATGCAGCAACAATTGAAGAAGAAGTTGAAACACTGCAAAACAAAGAAACACATATCGGGCA
ATTGGAAAAAGAACTTGCTTCTTTAAAAAAAGATTTATTGATTGAAGCAAAGAATTTAACAGAACTGAGAAAGAAATATG
CAAAAAAATTGACGAAACTGATCCATCAGGAATTAAAAGATCTGTACATGGCCAAAACAGTATTTGAAGTAAAAATTGAA
TCAGATGAAAATAATTTTACGAAAAATGGAATCGATAAAGCGGAATTTTATATTTCCACAAACCCCGGAGAACCGCTAAA
GCCATTGTCAAAAGTCGCGTCAGGGGGAGAGCTTTCGAGAATTATGCTGGCGTTAAAGAGCATATTCTCGAAACACCAGG
GTGTTACATCGATCATTTTTGACGAAGTGGATACAGGTGTCAGCGGAAGAGTTGCCCAAGCAATAGCTGAAAAAATATAC
AAAGTTTCTATTGGCTCTCAAGTGCTTTGCATTTCCCATCTGCCGCAAGTAGCCGCAATGGCCGATACTCATTTGTTCAT
TTCGAAAGTAACAAAGGCCGGAAGAACGATCACTTCGGTCACTCCTTTATCTGATGTTGAAAAAATAAAAGAAATCGGCA
GAATGATATCTGGTGTTGAAATTACGGATTTAACGAAAAAACATGCAGAGGAATTATTACTGCTTGCCAACCAAATAAAA
ACAGCAACTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I3EAB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.652

100

0.65

Multiple sequence alignment