Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BMMGA3_RS10130 Genome accession   NZ_CP007739
Coordinates   2098944..2099555 (+) Length   203 a.a.
NCBI ID   WP_004435202.1    Uniprot ID   I3E9U0
Organism   Bacillus methanolicus MGA3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2093944..2104555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMMGA3_RS10100 (BMMGA3_10530) - 2095226..2095699 (+) 474 WP_004435186.1 Hsp20/alpha crystallin family protein -
  BMMGA3_RS10105 (BMMGA3_10535) - 2095859..2096398 (-) 540 WP_004435190.1 YppG family protein -
  BMMGA3_RS10110 (BMMGA3_10540) - 2096597..2096806 (+) 210 WP_004435193.1 YppF family protein -
  BMMGA3_RS10115 (BMMGA3_10545) - 2096955..2097323 (-) 369 WP_004435196.1 YppE family protein -
  BMMGA3_RS10120 (BMMGA3_10550) - 2097404..2097664 (-) 261 WP_004435198.1 hypothetical protein -
  BMMGA3_RS10125 (BMMGA3_10555) - 2097839..2098825 (-) 987 WP_004435200.1 DUF2515 domain-containing protein -
  BMMGA3_RS10130 (BMMGA3_10560) recU 2098944..2099555 (+) 612 WP_004435202.1 Holliday junction resolvase RecU Machinery gene
  BMMGA3_RS10135 (BMMGA3_10565) - 2099599..2102511 (+) 2913 WP_038502205.1 transglycosylase domain-containing protein -
  BMMGA3_RS10140 (BMMGA3_10570) - 2102545..2103051 (-) 507 WP_034669376.1 YpoC family protein -
  BMMGA3_RS10145 (BMMGA3_10575) nth 2103057..2103713 (-) 657 WP_004435208.1 endonuclease III -
  BMMGA3_RS10150 (BMMGA3_10580) - 2103777..2104481 (-) 705 WP_004435210.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 24054.39 Da        Isoelectric Point: 9.4921

>NTDB_id=123001 BMMGA3_RS10130 WP_004435202.1 2098944..2099555(+) (recU) [Bacillus methanolicus MGA3]
MNFHYPNGKRYIPKQNFSENIQKGKNATYSNRGMTLEEDLNETNKYYLHNNIAVIHKKPTPVQIVHVDYPKRSAAVIKEA
YFKQPSTTDYNGVYKGKYIDFEAKETRYETSFPLKNFHEHQIQHMKNVLNHGGICFVILRFSSTEEIYFLKAEHLLEFWE
RMTNGGRKSISKEEIEKFGHYVPIGFRPRIDYIKIIDYVYNLA

Nucleotide


Download         Length: 612 bp        

>NTDB_id=123001 BMMGA3_RS10130 WP_004435202.1 2098944..2099555(+) (recU) [Bacillus methanolicus MGA3]
ATGAATTTTCACTATCCGAATGGAAAACGTTATATTCCGAAACAGAATTTTTCCGAAAACATACAGAAAGGAAAAAACGC
AACTTATAGCAACCGAGGAATGACGCTCGAAGAAGATCTAAATGAAACAAATAAATATTATCTACATAATAACATTGCTG
TCATTCACAAGAAGCCTACGCCAGTGCAAATTGTTCATGTTGATTACCCGAAAAGAAGCGCGGCAGTTATTAAGGAGGCT
TATTTTAAACAGCCGTCTACTACCGATTACAACGGTGTTTATAAGGGGAAATATATTGATTTTGAAGCAAAGGAAACCCG
ATATGAGACTTCCTTTCCTTTAAAAAACTTTCATGAACATCAAATTCAGCATATGAAAAATGTTTTAAACCATGGCGGAA
TTTGTTTTGTAATTCTCAGGTTTTCATCCACTGAGGAAATATATTTCCTTAAAGCTGAACATCTGCTAGAGTTTTGGGAA
AGAATGACTAATGGAGGCAGAAAGTCGATATCCAAGGAAGAGATTGAAAAATTCGGGCACTATGTACCTATTGGATTTCG
TCCCCGAATTGACTATATTAAAATAATAGATTATGTTTATAATCTTGCATGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I3E9U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

64.286

96.552

0.621

Multiple sequence alignment