Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BMMGA3_RS09075 Genome accession   NZ_CP007739
Coordinates   1883254..1883556 (+) Length   100 a.a.
NCBI ID   WP_004434614.1    Uniprot ID   -
Organism   Bacillus methanolicus MGA3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1878254..1888556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMMGA3_RS09050 (BMMGA3_09390) - 1878667..1879416 (+) 750 WP_004434608.1 MBL fold metallo-hydrolase -
  BMMGA3_RS16805 - 1879674..1880084 (-) 411 WP_050943018.1 hypothetical protein -
  BMMGA3_RS16810 - 1880068..1880604 (-) 537 WP_050943019.1 NAD-dependent epimerase/dehydratase family protein -
  BMMGA3_RS09060 (BMMGA3_09405) - 1880689..1882059 (-) 1371 WP_004434610.1 PTS ascorbate transporter subunit IIC -
  BMMGA3_RS09065 (BMMGA3_09410) - 1882083..1882364 (-) 282 WP_004434612.1 PTS sugar transporter subunit IIB -
  BMMGA3_RS09070 (BMMGA3_09415) - 1882406..1882861 (-) 456 WP_004434613.1 PTS sugar transporter subunit IIA -
  BMMGA3_RS09075 (BMMGA3_09420) abrB 1883254..1883556 (+) 303 WP_004434614.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BMMGA3_RS09080 (BMMGA3_09425) - 1883682..1884599 (-) 918 WP_004434615.1 MBL fold metallo-hydrolase -
  BMMGA3_RS09085 (BMMGA3_09430) - 1884801..1886429 (-) 1629 WP_004434617.1 MDR family MFS transporter -
  BMMGA3_RS09090 (BMMGA3_09435) - 1886606..1887589 (-) 984 WP_004434620.1 Gfo/Idh/MocA family protein -
  BMMGA3_RS09095 (BMMGA3_09440) - 1887949..1888140 (-) 192 WP_004434623.1 hypothetical protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11371.11 Da        Isoelectric Point: 5.1769

>NTDB_id=123000 BMMGA3_RS09075 WP_004434614.1 1883254..1883556(+) (abrB) [Bacillus methanolicus MGA3]
MKSTGVVRKVDELGRIVIPKELRNTFDIKEKDPLEIFVEEDKIILKKYSPYRACMITGEVSDHNISLADGKIVLSPEGAQ
MLLHDLQQLLNDRQFQGTDS

Nucleotide


Download         Length: 303 bp        

>NTDB_id=123000 BMMGA3_RS09075 WP_004434614.1 1883254..1883556(+) (abrB) [Bacillus methanolicus MGA3]
ATGAAATCAACCGGTGTTGTAAGGAAAGTGGACGAACTTGGACGTATTGTTATTCCGAAAGAGCTGCGCAATACTTTCGA
TATCAAAGAAAAAGACCCACTTGAGATTTTCGTAGAGGAAGACAAGATTATTTTGAAGAAGTACAGCCCATACCGGGCTT
GCATGATTACTGGGGAAGTTTCTGATCATAATATTTCTCTTGCTGATGGAAAAATTGTTTTAAGCCCTGAAGGTGCTCAA
ATGCTCCTTCATGATTTACAACAATTACTTAATGACAGACAATTTCAAGGGACTGACTCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

61.957

92

0.57

Multiple sequence alignment