Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   RC21_RS06025 Genome accession   NZ_CP010488
Coordinates   1141353..1143155 (-) Length   600 a.a.
NCBI ID   WP_059119132.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC092     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1136353..1148155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC21_RS06000 (RC21_06000) - 1136482..1137681 (+) 1200 WP_002933679.1 MFS transporter -
  RC21_RS06005 (RC21_06005) ciaC 1137737..1138057 (+) 321 WP_002866237.1 invasion antigen CiaC -
  RC21_RS06010 (RC21_06010) hemE 1138237..1139259 (+) 1023 WP_002933677.1 uroporphyrinogen decarboxylase -
  RC21_RS06015 (RC21_06015) - 1139256..1140158 (+) 903 WP_002933673.1 radical SAM protein -
  RC21_RS06020 (RC21_06020) - 1140155..1141351 (-) 1197 WP_002933667.1 hypothetical protein -
  RC21_RS06025 (RC21_06025) uvrC 1141353..1143155 (-) 1803 WP_059119132.1 excinuclease ABC subunit UvrC Machinery gene
  RC21_RS06030 (RC21_06030) - 1143148..1143642 (-) 495 WP_002933665.1 hypothetical protein -
  RC21_RS06035 (RC21_06035) guaA 1143781..1145316 (+) 1536 WP_002933664.1 glutamine-hydrolyzing GMP synthase -
  RC21_RS06040 (RC21_06040) - 1145402..1146862 (+) 1461 WP_002933663.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69705.68 Da        Isoelectric Point: 9.5025

>NTDB_id=122860 RC21_RS06025 WP_059119132.1 1141353..1143155(-) (uvrC) [Campylobacter jejuni strain CJ677CC092]
MTKENLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKSYFAFTPNLHANPRNSLRIQKMIEETVHLEFITTNSE
ADALILENSFIKQLHPKYNILLRDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
ASCKSPCIFYQISRCLAPCDKRISREKYLEILDEAMHALLNPSILIKNLEKQMLVLAQNENYEEAAKVRDQIVTIKDLEV
KVEIDIAKLEDFEVFALAFKNSMLSTLRFVVQNGKIISANSKITPIKNDIQWDKNEIYKQLILENFSMDIPWLANVIYVY
EEFEDRVLLEEILSQRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHGFTIQKELKSYFELENLPNDIEIFDNS
HLQGVANVGAMVTYSANSWDKSKYRKFHLKHKNDYDQMREVLMRRALDFDKNPPPDLWLIDGGKVLFDLAKEIIVSSGAN
VDILAISKEKIDAKAHRAKGGARDKIHSLKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNLGLS
SGVIQKLLAYYGNFESIYKADFKDLAMLVGKKAAQKIKEN

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=122860 RC21_RS06025 WP_059119132.1 1141353..1143155(-) (uvrC) [Campylobacter jejuni strain CJ677CC092]
TTGACTAAAGAGAATTTAGAAAATGAGTTAAAAACTCTTCCTAATAGTGCTGGAGTGTATCAATATTTTAATCAAGAAGG
AAAGCTTTTATATGTAGGTAAGGCTAAAAATCTTAAAAATCGTGTCAAATCTTATTTCGCTTTTACTCCAAATTTACATG
CAAACCCAAGAAATTCTTTAAGAATTCAAAAAATGATTGAAGAAACAGTGCATTTGGAATTTATCACTACTAATTCAGAA
GCCGATGCTTTGATTTTGGAAAATTCTTTTATCAAACAACTGCATCCAAAATATAATATTTTGCTAAGAGATGATAAAAC
TTATCCTTATATTTATGTGGATTTTGAAGAAGAATTTCCACGCTTTGAGATCACTAGAAAATTAGTAAAAAAAAGCAAAA
TTAAATATTTTGGCCCTTTTTTTAAAGGCGCTAGAGAGCTTTTAGATGCGCTTTATTTATACTATCCTTTAAAGCAAAAA
GCAAGTTGTAAATCCCCTTGTATTTTTTATCAAATTTCTCGTTGTCTTGCACCTTGTGATAAACGCATCAGCAGGGAAAA
ATACCTTGAAATTTTAGATGAGGCTATGCACGCGCTTTTAAATCCTAGTATTTTAATAAAAAATTTAGAAAAACAAATGC
TTGTTTTAGCACAGAATGAAAATTATGAAGAAGCAGCTAAAGTAAGAGATCAGATTGTAACGATTAAGGATTTAGAAGTT
AAGGTTGAAATAGATATTGCAAAATTAGAAGATTTTGAAGTGTTTGCTTTAGCTTTTAAAAATTCTATGCTTTCAACCTT
GCGTTTTGTAGTGCAAAATGGAAAAATTATCAGTGCAAATTCTAAGATTACTCCTATAAAAAATGATATACAATGGGATA
AAAATGAAATTTACAAGCAATTGATTTTAGAAAATTTTAGCATGGATATTCCTTGGCTTGCAAATGTTATTTATGTTTAT
GAAGAATTTGAAGATAGAGTGCTTTTAGAAGAAATTTTAAGCCAAAGATTTGATAAAAAAATCAGTATTAAAATTCCTAA
AATAGGAGAAAAAAGAAGAATTTGTGATTTGGCTTTTCAAAACGCCCTTTTAAATATAGAAAAAGAGCAAAAAAATCATG
GTTTTACTATACAAAAAGAATTAAAGTCTTATTTTGAGCTTGAAAATTTACCAAATGATATAGAAATTTTTGATAATTCT
CATTTGCAAGGCGTGGCAAATGTTGGAGCTATGGTAACTTATAGTGCAAATTCTTGGGATAAGTCAAAATATCGCAAATT
TCATTTAAAACATAAAAATGATTATGATCAAATGCGTGAGGTTTTAATGCGTAGGGCTTTGGACTTTGATAAAAATCCAC
CTCCTGATTTATGGCTTATAGATGGAGGAAAGGTTTTGTTTGATTTGGCTAAAGAAATCATTGTAAGTAGTGGAGCTAAT
GTTGATATTTTAGCTATTTCAAAAGAAAAAATCGATGCAAAAGCACATAGGGCTAAAGGAGGTGCTAGAGATAAAATTCA
TTCCTTAAAAGGAGAATTTAGCCTAAGTATTAACGATAAAAAACTACAATTCTTACAGAAATTAAGAGATGAAGCGCATC
GTTTTGCTATCAGCTTTCATCAAAATACTAAGAAAAAACAGGACTTGAATAGTTCTAAGCTTGTAAATTTAGGACTTAGT
TCAGGGGTTATACAAAAACTTTTAGCGTATTATGGAAATTTTGAATCTATATATAAGGCTGATTTTAAAGATCTTGCAAT
GCTTGTAGGCAAGAAAGCGGCACAAAAGATAAAGGAAAATTGA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-537)

GIY-YIG catalytic domain (GIY-YIG)

(18-99)

UvrB/uvrC motif (UVR)

(205-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

46.392

97

0.45

Multiple sequence alignment