Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | RR41_RS12090 | Genome accession | NZ_CP007712 |
| Coordinates | 2517651..2518031 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836909.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii LAC-4 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2512651..2523031
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RR41_RS12060 (ABLAC_24080) | kdsB | 2513554..2514315 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| RR41_RS12065 (ABLAC_24090) | - | 2514327..2515307 (+) | 981 | WP_001075419.1 | DNA polymerase III subunit delta' | - |
| RR41_RS12070 (ABLAC_24100) | - | 2515319..2515660 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| RR41_RS12075 (ABLAC_24110) | - | 2515678..2516451 (+) | 774 | WP_000497301.1 | TatD family hydrolase | - |
| RR41_RS12080 (ABLAC_24120) | - | 2516489..2517097 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| RR41_RS12085 (ABLAC_24130) | - | 2517107..2517661 (+) | 555 | WP_000841372.1 | type II secretion system protein | - |
| RR41_RS12090 (ABLAC_24140) | xcpV | 2517651..2518031 (+) | 381 | WP_000836909.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| RR41_RS12095 (ABLAC_24150) | xcpW | 2518031..2518732 (+) | 702 | WP_000594588.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| RR41_RS12100 (ABLAC_24160) | gspK | 2518732..2519691 (+) | 960 | WP_001218621.1 | type II secretion system minor pseudopilin GspK | - |
| RR41_RS12105 (ABLAC_24170) | - | 2519921..2520517 (+) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| RR41_RS12110 (ABLAC_24180) | ung | 2520568..2521281 (+) | 714 | WP_001177527.1 | uracil-DNA glycosylase | - |
| RR41_RS12115 (ABLAC_24190) | - | 2521278..2522402 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| RR41_RS12120 (ABLAC_24200) | tadA | 2522409..2522912 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13991.24 Da Isoelectric Point: 9.8004
>NTDB_id=122811 RR41_RS12090 WP_000836909.1 2517651..2518031(+) (xcpV) [Acinetobacter baumannii LAC-4]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDLDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDLDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=122811 RR41_RS12090 WP_000836909.1 2517651..2518031(+) (xcpV) [Acinetobacter baumannii LAC-4]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCTGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCTGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |