Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   L2625_RS07040 Genome accession   NZ_CP007687
Coordinates   1382790..1384481 (+) Length   563 a.a.
NCBI ID   WP_012951592.1    Uniprot ID   A0A3T1RAE5
Organism   Listeria monocytogenes strain L2625     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1377790..1389481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2625_RS07010 (L2625_01455) - 1377800..1378027 (+) 228 WP_003722489.1 exodeoxyribonuclease VII small subunit -
  L2625_RS07015 (L2625_01456) - 1378030..1378911 (+) 882 WP_003732268.1 polyprenyl synthetase family protein -
  L2625_RS07020 (L2625_01458) - 1379110..1379310 (+) 201 WP_003719639.1 cold-shock protein -
  L2625_RS07025 (L2625_01459) dxs 1379477..1381306 (+) 1830 WP_072217202.1 1-deoxy-D-xylulose-5-phosphate synthase -
  L2625_RS07030 (L2625_01460) - 1381303..1382127 (+) 825 WP_033920286.1 TlyA family RNA methyltransferase -
  L2625_RS07035 (L2625_01461) ahrC 1382318..1382767 (+) 450 WP_003722493.1 transcriptional regulator AhrC/ArgR -
  L2625_RS07040 (L2625_01462) recN 1382790..1384481 (+) 1692 WP_012951592.1 DNA repair protein RecN Machinery gene
  L2625_RS07045 (L2625_01463) - 1384610..1385476 (+) 867 WP_003732271.1 phosphate acyltransferase -
  L2625_RS07050 (L2625_01464) buk 1385613..1386680 (+) 1068 WP_003722496.1 butyrate kinase -
  L2625_RS07055 (L2625_01465) lpdA 1386695..1388122 (+) 1428 WP_014600811.1 dihydrolipoyl dehydrogenase -
  L2625_RS07060 (L2625_01466) - 1388147..1389142 (+) 996 WP_003738888.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63538.42 Da        Isoelectric Point: 5.1267

>NTDB_id=122599 L2625_RS07040 WP_012951592.1 1382790..1384481(+) (recN) [Listeria monocytogenes strain L2625]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKLAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMETAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKTELTKQAATLTDIRKKAAVTLEKQIKQELNQLYMEKAIFSVRFE
ANKMELTELGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGVEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=122599 L2625_RS07040 WP_012951592.1 1382790..1384481(+) (recN) [Listeria monocytogenes strain L2625]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCACGGAGAGGAACGTTTAGAGCTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCT
TTAATAGAAAATGGCATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGCCTGTTTCGCTCGGGAAAAAATAGTTG
CCGAATTAATGGTAAGCTTGTAACTACTGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTATCATTACTTGATCGATTCGCTTCTGACAAAATCAAGCTAGCACTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACGATTGAGAAAGAATGGCAAAATTGGACAAAAAATGAGCGAGAATT
AGCACAACGTCTTGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCCAATTTGCAAGCTGGTGAAGAAGATCGTT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGCGCTTATGCGGCGATTCAAGGC
GAGCCAGGTGGACTTGAATTCGTTGGGGAAGCGATGCGTCAAATGGAGACAGCTGCAAGTATTCATACGGATTATAAAGC
AGTTAGTGAAGCAATTTCTTCTAGCTACTATATGTTAGAAGATAGCATGAGCCAAATCAGACAGTCACTTGATCAGCTCG
AATTCCAACCAGAAGAACTTAATCAAATTGAATCGCGTTTAAATGATTTAAACCAATTGAAACGCAAATATGGTAAAACA
ATTGAAGATATCATCCAGTATGAGCAAGAAATAAGTAGCGAAATGGAAAAACTAACGGATAGTGAATCGCATGTGGGTCA
TTTAGAGACAAAATTAGCCACACTCAAAACAGAACTAACAAAACAAGCAGCTACGCTCACTGATATCCGTAAAAAAGCAG
CTGTCACATTAGAAAAACAAATTAAACAAGAATTAAATCAACTTTATATGGAGAAAGCCATTTTTAGTGTGCGTTTTGAA
GCAAACAAAATGGAACTAACAGAATTGGGACAAGATAGCGTCGTCTTTTATATGTCAACAAATCCAGGAGAACCATTAAA
ACCATTAGCAAAAATTGCTTCTGGCGGAGAGTTATCCAGAATGATGTTAGCTTTAAAAACCATTTTCTCTAGACACCAAG
GTATTACATCAATTATTTTCGATGAAGTTGATACCGGAGTAAGTGGACGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTCGGCTCGCAAGTACTATGTATCAGTCATTTGCCTCAAGTAGCAGCAATGGCGAACCACCATTACTACAT
TACAAAAAAAGTCCAAAATAAACGTACAACGACTTCCGTTACAGTGCTTAAAGGAGTAGAAAAAGTAGAAGAAATCAGCC
GAATGATTGCTGGTATAGAAGTCACTGAACTAACAAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T1RAE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.604

100

0.538

Multiple sequence alignment