Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   L2626_RS15115 Genome accession   NZ_CP007684
Coordinates   1663420..1663629 (-) Length   69 a.a.
NCBI ID   WP_014930816.1    Uniprot ID   -
Organism   Listeria monocytogenes strain L2626     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1658420..1668629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2626_RS08340 (L2626_01741) - 1659994..1661613 (+) 1620 WP_014600447.1 class I SAM-dependent DNA methyltransferase -
  L2626_RS08345 (L2626_01742) - 1661606..1662718 (+) 1113 WP_014600446.1 restriction endonuclease subunit S -
  L2626_RS15010 (L2626_01743) - 1662858..1663391 (-) 534 WP_014930817.1 hypothetical protein -
  L2626_RS15115 ccrB 1663420..1663629 (-) 210 WP_014930816.1 recombinase zinc beta ribbon domain-containing protein Machinery gene
  L2626_RS15015 (L2626_01744) - 1663611..1664060 (-) 450 WP_223168478.1 recombinase family protein -
  L2626_RS08365 (L2626_01746) rlmH 1664499..1664978 (-) 480 WP_008946708.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  L2626_RS08370 (L2626_01747) htrA 1665665..1667170 (-) 1506 WP_014930814.1 serine protease HtrA -
  L2626_RS08375 (L2626_01748) - 1667268..1668098 (-) 831 WP_003722911.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 69 a.a.        Molecular weight: 7910.99 Da        Isoelectric Point: 10.3845

>NTDB_id=122503 L2626_RS15115 WP_014930816.1 1663420..1663629(-) (ccrB) [Listeria monocytogenes strain L2626]
MAANNVINRLKDGTKKRIRYYSCFQFRNKGASVCHANSIRADQAEQFVAERLKETVQHPQIIKEVNSST

Nucleotide


Download         Length: 210 bp        

>NTDB_id=122503 L2626_RS15115 WP_014930816.1 1663420..1663629(-) (ccrB) [Listeria monocytogenes strain L2626]
ATGGCAGCAAATAATGTGATCAATCGACTAAAGGATGGAACCAAAAAACGTATTCGGTATTATTCCTGTTTTCAATTTCG
AAATAAAGGAGCGAGTGTTTGCCATGCGAATTCAATCCGAGCAGATCAAGCAGAACAGTTTGTGGCTGAAAGGTTGAAGG
AAACCGTTCAACACCCACAAATTATAAAAGAAGTTAATTCAAGCACTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

58.462

94.203

0.551

Multiple sequence alignment