Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ER12_RS08070 Genome accession   NZ_CP007676
Coordinates   1625245..1625691 (-) Length   148 a.a.
NCBI ID   WP_001791635.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HUV05     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1620245..1630691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ER12_RS08040 (ER12_007640) gcvPA 1621171..1622517 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ER12_RS08045 (ER12_007645) gcvT 1622537..1623628 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  ER12_RS08050 (ER12_007650) - 1623787..1624311 (-) 525 WP_001015117.1 shikimate kinase -
  ER12_RS08055 - 1624301..1624447 (-) 147 WP_001789879.1 hypothetical protein -
  ER12_RS08060 (ER12_007655) comGF 1624544..1625041 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  ER12_RS08065 (ER12_007660) comGE 1624959..1625258 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  ER12_RS08070 (ER12_007665) comGD 1625245..1625691 (-) 447 WP_001791635.1 competence type IV pilus minor pilin ComGD Machinery gene
  ER12_RS08075 (ER12_007670) comGC 1625669..1625980 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ER12_RS08080 (ER12_007675) comGB 1625994..1627064 (-) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  ER12_RS08085 (ER12_007680) comGA 1627036..1628010 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  ER12_RS08090 (ER12_007685) - 1628062..1628685 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ER12_RS08095 (ER12_007690) - 1628682..1629011 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ER12_RS08100 (ER12_007695) - 1629011..1629997 (-) 987 WP_000161314.1 ROK family glucokinase -
  ER12_RS08105 (ER12_007700) - 1629994..1630197 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17199.34 Da        Isoelectric Point: 10.2908

>NTDB_id=122430 ER12_RS08070 WP_001791635.1 1625245..1625691(-) (comGD) [Staphylococcus aureus strain HUV05]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNNIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=122430 ER12_RS08070 WP_001791635.1 1625245..1625691(-) (comGD) [Staphylococcus aureus strain HUV05]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAATATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986

Multiple sequence alignment