Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MC25239_RS07250 Genome accession   NZ_CP007669
Coordinates   1588375..1589889 (-) Length   504 a.a.
NCBI ID   WP_003657715.1    Uniprot ID   A0A1E9VVE0
Organism   Moraxella catarrhalis strain ATCC 25239     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1583375..1594889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MC25239_RS07235 (MC25239_01458) map 1584524..1585312 (-) 789 WP_003657719.1 type I methionyl aminopeptidase -
  MC25239_RS07240 (MC25239_01459) - 1585523..1585858 (-) 336 WP_003663769.1 TIGR01244 family sulfur transferase -
  MC25239_RS07245 (MC25239_01460) - 1586124..1588274 (+) 2151 WP_003658598.1 NADPH-dependent 2,4-dienoyl-CoA reductase -
  MC25239_RS07250 (MC25239_01461) comM 1588375..1589889 (-) 1515 WP_003657715.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MC25239_RS07255 (MC25239_01462) rapA 1589975..1592839 (-) 2865 WP_003672553.1 RNA polymerase-associated protein RapA -
  MC25239_RS07260 (MC25239_01463) - 1593063..1594019 (+) 957 WP_003658602.1 D-2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54604.69 Da        Isoelectric Point: 8.0189

>NTDB_id=122282 MC25239_RS07250 WP_003657715.1 1588375..1589889(-) (comM) [Moraxella catarrhalis strain ATCC 25239]
MSFAKVFTRSVVGLQAPQVFVEVHLSQGLPALTIVGLPEASVRESKDRVRSALINSGYEFPNRRLTINLAPADLPKDGAR
LDLPIAMGILAASGQIDDKVLAQFEFVGELALNGELRPVSGALAIARAIKSSPCDGKPRTLIMPSINADEAVKVGDMTVL
AAENLETVCRHLDVVSGISQNQEHLLSPVTLPSQPQVMQYAYDLADVKGQHHARRALEIAAAGGHSLLFTGSPGSGKTLM
ASRLPSILPPLTDAETLEVASIYSIAGVNYAFGERPFRAVHHTISATALVGGGSKPKPGEISLAHKGAIFLDEIPEFDRK
TLETLRQPIESKQITISRANAQVSFPADFQLIAAMNPCPCGYYGDTTNRCRCRPEQIKKYQDKLSGPLLDRIDLHITVPA
LPIEDLQNAPKGESSDDVRQRVVAARNMAIARQGKANYELTVNELDQFAILGQKEQQMLKMAQSKLNLSARSYHRILRVA
RTIADLAASEHIKTAHVAEALSYR

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=122282 MC25239_RS07250 WP_003657715.1 1588375..1589889(-) (comM) [Moraxella catarrhalis strain ATCC 25239]
ATGTCATTTGCCAAAGTTTTTACACGCTCAGTTGTTGGTTTACAAGCGCCACAAGTATTTGTTGAAGTTCATCTTTCTCA
AGGGTTGCCTGCTCTGACGATTGTCGGGCTGCCTGAAGCTTCGGTACGAGAAAGCAAAGATCGGGTACGCTCAGCACTGA
TTAACTCAGGATACGAATTTCCCAATCGCCGTTTGACAATCAATCTTGCACCTGCCGACTTGCCAAAAGATGGGGCAAGA
CTGGATTTACCAATCGCAATGGGTATTTTGGCAGCCAGTGGTCAGATTGATGATAAGGTTTTAGCACAGTTTGAATTTGT
GGGAGAGCTTGCACTTAATGGAGAGCTTAGACCTGTTTCTGGTGCACTTGCCATCGCTCGTGCAATTAAATCCAGTCCTT
GTGATGGTAAGCCTCGTACGCTGATTATGCCAAGCATTAATGCTGATGAAGCGGTCAAAGTGGGCGATATGACGGTGCTG
GCTGCTGAGAATTTAGAGACGGTTTGTCGTCATTTGGATGTGGTGAGCGGCATCAGCCAAAATCAAGAACATCTCTTATC
GCCCGTAACTTTGCCAAGTCAGCCTCAAGTGATGCAGTATGCGTATGATTTGGCAGATGTCAAAGGGCAGCATCATGCAC
GCCGAGCACTTGAGATTGCAGCGGCTGGCGGTCATTCGCTATTATTTACAGGATCTCCAGGGTCGGGGAAGACTTTGATG
GCATCGCGTCTGCCCAGTATTTTGCCACCATTGACCGATGCAGAGACTTTAGAGGTGGCAAGTATCTATTCAATTGCAGG
TGTCAATTATGCGTTTGGCGAGCGGCCGTTTCGTGCCGTGCATCATACCATCTCTGCGACTGCTTTGGTTGGTGGCGGCT
CAAAACCCAAACCTGGTGAGATTAGTTTGGCTCATAAAGGAGCGATTTTCCTTGATGAGATTCCAGAATTTGATCGTAAA
ACACTTGAAACATTACGCCAACCCATTGAGTCAAAACAGATTACCATTTCTCGTGCAAATGCTCAAGTGTCATTTCCTGC
TGATTTTCAGCTGATTGCCGCCATGAATCCTTGCCCTTGTGGGTATTATGGCGATACCACAAACCGTTGCCGCTGTCGAC
CTGAGCAAATTAAAAAATATCAAGACAAGCTGTCAGGGCCGTTATTAGACCGCATTGATTTACATATTACTGTGCCTGCT
TTACCCATTGAGGATTTACAAAATGCACCAAAGGGCGAGTCATCAGATGATGTTCGCCAAAGAGTTGTGGCAGCACGCAA
TATGGCGATTGCTCGTCAAGGTAAAGCCAATTATGAGCTGACGGTCAATGAACTTGATCAATTTGCCATATTGGGTCAAA
AAGAACAGCAAATGCTTAAAATGGCTCAATCAAAGCTTAATTTGTCTGCTCGCAGTTACCACCGTATTTTACGCGTAGCA
CGCACCATTGCAGATTTGGCCGCCAGTGAGCACATCAAAACAGCACATGTGGCAGAAGCTTTAAGCTATCGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E9VVE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.758

100

0.526
  comM Glaesserella parasuis strain SC1401

51.373

100

0.52
  comM Legionella pneumophila str. Paris

51.076

100

0.518
  comM Legionella pneumophila strain ERS1305867

51.076

100

0.518
  comM Vibrio cholerae strain A1552

50.787

100

0.512
  comM Vibrio campbellii strain DS40M4

49.803

100

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.553

100

0.454

Multiple sequence alignment