Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   M0579_RS11145 Genome accession   NZ_CP007668
Coordinates   2152978..2154723 (-) Length   581 a.a.
NCBI ID   WP_002223755.1    Uniprot ID   -
Organism   Neisseria meningitidis M0579     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2147978..2159723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0579_RS11125 (M0579_02057) - 2148190..2148624 (+) 435 WP_002223758.1 hypothetical protein -
  M0579_RS11130 (M0579_02058) - 2148683..2148952 (-) 270 WP_002213508.1 HU family DNA-binding protein -
  M0579_RS11135 (M0579_02059) lon 2149134..2151596 (-) 2463 WP_002223757.1 endopeptidase La -
  M0579_RS11140 (M0579_02060) - 2151847..2152950 (+) 1104 WP_002223756.1 methyltransferase -
  M0579_RS11145 (M0579_02061) recD 2152978..2154723 (-) 1746 WP_002223755.1 exodeoxyribonuclease V subunit alpha Machinery gene
  M0579_RS11150 (M0579_02062) lolD 2154791..2155486 (-) 696 WP_002223754.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  M0579_RS11155 (M0579_02063) - 2155479..2156726 (-) 1248 WP_002223753.1 lipoprotein-releasing ABC transporter permease subunit -
  M0579_RS11160 (M0579_02064) - 2156931..2157209 (+) 279 WP_002213502.1 hypothetical protein -
  M0579_RS11165 (M0579_02065) recR 2157265..2157882 (-) 618 WP_002223752.1 recombination mediator RecR -
  M0579_RS11170 (M0579_02066) - 2157949..2159487 (-) 1539 WP_002223751.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62828.47 Da        Isoelectric Point: 6.0083

>NTDB_id=122257 M0579_RS11145 WP_002223755.1 2152978..2154723(-) (recD) [Neisseria meningitidis M0579]
MERQTDEFAQAAARAAIWFLARYAGSGSEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAIRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPLDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSHKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEEAFRQAA
ATVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=122257 M0579_RS11145 WP_002223755.1 2152978..2154723(-) (recD) [Neisseria meningitidis M0579]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCTGGTTTTTGGCACGCTATGCGGGTTCAGG
CAGCGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCAGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACAGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCATCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTGGACGTATTG
GTTATCGATGAAGCCTCCATGTTGGATACCGCATTGATGTTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCACAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGTGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTCGTCCTCGCGGCGTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGACAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCTGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGAGAGAAGTTCGTATTCTTCGGCGGGGAAGAAGCCTTCCGGCAAGCTGCC
GCCACCGTCAAAACGCGTCAGACGGCGTTGGGCAGTATGCTTGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-289)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

94.836

100

0.948

Multiple sequence alignment