Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RC42_RS00345 Genome accession   NZ_CP010474
Coordinates   63497..65002 (-) Length   501 a.a.
NCBI ID   WP_002933762.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC536     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 58497..70002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC42_RS00315 (RC42_00315) - 58699..59883 (-) 1185 WP_002933769.1 metallophosphoesterase -
  RC42_RS00320 (RC42_00320) - 59893..60102 (-) 210 WP_002933768.1 alkylphosphonate utilization protein -
  RC42_RS00325 (RC42_00325) - 60095..60814 (-) 720 WP_002933766.1 TerC family protein -
  RC42_RS00330 (RC42_00330) purN 60886..61452 (-) 567 WP_002933764.1 phosphoribosylglycinamide formyltransferase -
  RC42_RS00335 (RC42_00335) - 61443..62813 (-) 1371 WP_052803033.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  RC42_RS00340 (RC42_00340) - 62797..63495 (-) 699 WP_002826913.1 NYN domain-containing protein -
  RC42_RS00345 (RC42_00345) comM 63497..65002 (-) 1506 WP_002933762.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RC42_RS00350 (RC42_00350) def 64999..65526 (-) 528 WP_002851936.1 peptide deformylase -
  RC42_RS00355 (RC42_00355) clpP 65562..66146 (-) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  RC42_RS00360 (RC42_00360) tig 66146..67480 (-) 1335 WP_002933761.1 trigger factor -
  RC42_RS00365 (RC42_00365) folE 67622..68194 (+) 573 WP_002933760.1 GTP cyclohydrolase I FolE -
  RC42_RS00370 (RC42_00370) fliI 68194..69579 (+) 1386 WP_002933759.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56443.46 Da        Isoelectric Point: 8.4703

>NTDB_id=122230 RC42_RS00345 WP_002933762.1 63497..65002(-) (comM) [Campylobacter jejuni strain CJ677CC536]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASVAIKESVEHIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELELDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFASPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKTSISSKEMSEKILQAFIFGKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNINKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=122230 RC42_RS00345 WP_002933762.1 63497..65002(-) (comM) [Campylobacter jejuni strain CJ677CC536]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGACTTGCAAGTGTAGCGATTAAGGAAAGTGTCGAACACATCAAAGCCACGCTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATTACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCGCATTTTGATTTG
GCTATCGCCTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGAACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTTTCTGCTAAAATTAAAAAAGCTAAAATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTGGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGTTTTTCTCACAATCATCCTTTATTCGCAAGCCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGATATCAAAGGACAGGAAAAAGCCAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGTATGTGTGCTAAACGCCTTGTT
TATATCATGCCTCCTCAAAGTTTAAGTGAAATTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGTGGAGGAACAAAAAATGCTA
GAATTGGAGAAGTCGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAGCCTTTAGAGGATCATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGCGGAAATTTATTTTCTAAAAATCTTTCTTGTGTTTGTAGTGAAAATGAGA
TTAAAAAATACAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAACGAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTGGTAAAAAACGAGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTAAGTCGTTTTTGTGTACTAGAAAAAGATGCCAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCGCTTAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAACAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.094

99.601

0.469

Multiple sequence alignment