Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   B6116_RS08250 Genome accession   NZ_CP007667
Coordinates   1545489..1547234 (-) Length   581 a.a.
NCBI ID   WP_002226351.1    Uniprot ID   -
Organism   Neisseria meningitidis strain B6116/77     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1540489..1552234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6116_RS08230 (B6116_01536) - 1540657..1541091 (+) 435 WP_002217157.1 hypothetical protein -
  B6116_RS08235 (B6116_01537) - 1541150..1541419 (-) 270 WP_002213508.1 HU family DNA-binding protein -
  B6116_RS08240 (B6116_01538) lon 1541601..1544063 (-) 2463 WP_002217155.1 endopeptidase La -
  B6116_RS12685 - 1544163..1544339 (+) 177 WP_226893060.1 nitric oxide synthase -
  B6116_RS08245 (B6116_01539) - 1544314..1545417 (+) 1104 WP_002235817.1 methyltransferase -
  B6116_RS08250 (B6116_01540) recD 1545489..1547234 (-) 1746 WP_002226351.1 exodeoxyribonuclease V subunit alpha Machinery gene
  B6116_RS08255 (B6116_01541) lolD 1547302..1547997 (-) 696 WP_002226350.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  B6116_RS08260 (B6116_01542) - 1547990..1549237 (-) 1248 WP_002220969.1 lipoprotein-releasing ABC transporter permease subunit -
  B6116_RS08265 (B6116_01543) - 1549442..1549720 (+) 279 WP_002220967.1 hypothetical protein -
  B6116_RS08270 (B6116_01544) recR 1549776..1550393 (-) 618 WP_002217147.1 recombination mediator RecR -
  B6116_RS08275 (B6116_01545) - 1550460..1551998 (-) 1539 WP_002220964.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62961.66 Da        Isoelectric Point: 5.9088

>NTDB_id=122206 B6116_RS08250 WP_002226351.1 1545489..1547234(-) (recD) [Neisseria meningitidis strain B6116/77]
MERQTDEFAQAAARAAIWFLARYAGSGSEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAADTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQPFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCRHVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEEAFRQAA
ATVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=122206 B6116_RS08250 WP_002226351.1 1545489..1547234(-) (recD) [Neisseria meningitidis strain B6116/77]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCTGGTTTTTGGCACGCTATGCGGGTTCAGG
CAGCGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGACACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGCCTTTTATGGTGATTACCGGCGGACCCGGGACGGGTAAAACGACGACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGCATTGATGCTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATAGGGGCGGTGCTGTCCGTTTTGTCACAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCACCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCACACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCGGGCATT
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCCGCCATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCATATTTTGCCGGAGAGCCGATTATGATCAGGCAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATACCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGAGAGAAGTTCGTATTCTTCGGCGGGGAAGAAGCCTTCCGGCAAGCTGCC
GCCACCGTCAAAACGCGTCAGACGGCATTGGGCAGTATGCTCGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-290)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

95.181

100

0.952

Multiple sequence alignment