Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   B6116_RS06525 Genome accession   NZ_CP007667
Coordinates   1258368..1259033 (+) Length   221 a.a.
NCBI ID   WP_047957332.1    Uniprot ID   -
Organism   Neisseria meningitidis strain B6116/77     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1253368..1264033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6116_RS06505 (B6116_01224) - 1253450..1253782 (+) 333 WP_002213854.1 hypothetical protein -
  B6116_RS06510 (B6116_01225) - 1254113..1254622 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  B6116_RS06515 (B6116_01226) - 1255903..1256490 (-) 588 WP_002220670.1 superoxide dismutase -
  B6116_RS06520 (B6116_01227) dnaB 1256653..1258059 (+) 1407 WP_002227431.1 replicative DNA helicase -
  B6116_RS06525 (B6116_01228) pilH 1258368..1259033 (+) 666 WP_047957332.1 GspH/FimT family pseudopilin Machinery gene
  B6116_RS06530 (B6116_01229) pilV 1259066..1259677 (+) 612 WP_047957366.1 type IV pilus modification protein PilV Machinery gene
  B6116_RS06535 (B6116_01230) pilJ 1259674..1260654 (+) 981 WP_047957333.1 PilW family protein Machinery gene
  B6116_RS06540 (B6116_01231) pilK 1260633..1261226 (+) 594 WP_047957334.1 pilus assembly PilX family protein Machinery gene
  B6116_RS06545 (B6116_01232) pilX 1261231..1261704 (+) 474 WP_193376947.1 PilX family type IV pilin Machinery gene

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24556.04 Da        Isoelectric Point: 9.4348

>NTDB_id=122201 B6116_RS06525 WP_047957332.1 1258368..1259033(+) (pilH) [Neisseria meningitidis strain B6116/77]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKGGAPN
NKCDFGKKGQGMLAFGDKNGNKTYDGDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
NQDLTNTSRFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRNDRRAVCQH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=122201 B6116_RS06525 WP_047957332.1 1258368..1259033(+) (pilH) [Neisseria meningitidis strain B6116/77]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGAGAAGCCGTCCGGCTCAATCTTCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGGCGGTGCGCCCAAC
AATAAATGTGACTTCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGACATATGACGGCGA
TACGGCGGATGTTCTCCTTCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTTGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAGATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGAAACG
ATAGGCGTGCCGTATGCCAACATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.425

100

0.864

Multiple sequence alignment