Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RC02_RS05855 Genome accession   NZ_CP010470
Coordinates   1105094..1106434 (-) Length   446 a.a.
NCBI ID   WP_002933842.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC026     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1100094..1111434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC02_RS05830 (RC02_05835) - 1100231..1101001 (+) 771 WP_002933846.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  RC02_RS05835 (RC02_05840) metE 1101013..1103277 (+) 2265 WP_002933844.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  RC02_RS05840 (RC02_05845) metF 1103287..1104135 (+) 849 WP_002892722.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  RC02_RS05845 (RC02_05850) - 1104157..1104348 (-) 192 WP_002933843.1 hypothetical protein -
  RC02_RS05850 (RC02_05855) atpB 1104345..1105025 (-) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  RC02_RS05855 (RC02_05860) radA 1105094..1106434 (-) 1341 WP_002933842.1 DNA repair protein RadA Machinery gene
  RC02_RS05860 (RC02_05865) pilA 1106434..1107300 (-) 867 WP_002853827.1 signal recognition particle-docking protein FtsY Machinery gene
  RC02_RS05865 (RC02_05870) - 1107300..1107857 (-) 558 WP_002933832.1 TlpA disulfide reductase family protein -
  RC02_RS05870 (RC02_05875) - 1107940..1108566 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  RC02_RS05875 (RC02_05880) rny 1108487..1110040 (+) 1554 WP_002853829.1 ribonuclease Y -
  RC02_RS05880 (RC02_05885) - 1110049..1110606 (+) 558 WP_002933819.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49052.97 Da        Isoelectric Point: 6.9288

>NTDB_id=122069 RC02_RS05855 WP_002933842.1 1105094..1106434(-) (radA) [Campylobacter jejuni strain CJ677CC026]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFIELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIIDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=122069 RC02_RS05855 WP_002933842.1 1105094..1106434(-) (radA) [Campylobacter jejuni strain CJ677CC026]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTATAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGTATGAAAA
CAAGCGAGGCTGTTTGTATTGAAGATGTGGAGTTAGAACATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCCCAGATTAAAT
TAAGAGCTGATCGCCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGTATTCTTATCATTGATTCTATACAAACTCTATATTCAAATAAAATCACTTCAGCAGCAGG
AAGCATTACTCAAGTGCGTGAGATTACTTTTGAACTTATGCGTGTTAGCAAGGCTTATAATATCAGTACTTTTATCATAG
GGCATATTACTAAAGAAGGTGCTATAGCAGGACCTAGAGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAAGGA
GATGCCACTAAAGAAATTAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATTAGCGCAAAAGATTTAGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCCTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAACTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTGGCTGTGGTTGCTGCGATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGTAAAGATAGTATTTTTATAGGGGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCCATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGGCTTAAGTGTTTTGTTGCTAAAGAACTTTCGCAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(71-220)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

45.861

100

0.46
  radA Streptococcus pneumoniae Rx1

45.861

100

0.46
  radA Streptococcus pneumoniae D39

45.861

100

0.46
  radA Streptococcus pneumoniae TIGR4

45.861

100

0.46
  radA Streptococcus mitis NCTC 12261

45.843

99.776

0.457
  radA Streptococcus mitis SK321

45.843

99.776

0.457
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.437

97.534

0.453

Multiple sequence alignment