Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LSJ_RS02920 Genome accession   NZ_CP007646
Coordinates   583052..584719 (+) Length   555 a.a.
NCBI ID   WP_044004723.1    Uniprot ID   A0A089QBY9
Organism   Ligilactobacillus salivarius strain JCM1046     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 578052..589719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSJ_RS02890 (LSJ_0579) folD 578434..579291 (+) 858 WP_011475808.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  LSJ_RS02895 (LSJ_0580) xseA 579284..580624 (+) 1341 WP_034982367.1 exodeoxyribonuclease VII large subunit -
  LSJ_RS02900 (LSJ_0581) - 580624..580851 (+) 228 WP_003699848.1 exodeoxyribonuclease VII small subunit -
  LSJ_RS02905 (LSJ_0582) - 580817..581734 (+) 918 WP_191980116.1 polyprenyl synthetase family protein -
  LSJ_RS02910 (LSJ_0583) - 581737..582564 (+) 828 WP_003704070.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  LSJ_RS02915 (LSJ_0584) - 582589..583047 (+) 459 WP_003699854.1 ArgR family transcriptional regulator -
  LSJ_RS02920 (LSJ_0585) recN 583052..584719 (+) 1668 WP_044004723.1 DNA repair protein RecN Machinery gene
  LSJ_RS02925 (LSJ_0586c) lexA 584783..585403 (-) 621 WP_003699857.1 transcriptional repressor LexA -
  LSJ_RS02930 (LSJ_0587) - 585550..585804 (+) 255 WP_003704077.1 DUF896 domain-containing protein -
  LSJ_RS02935 (LSJ_0588) - 585931..586155 (+) 225 WP_003699860.1 YneF family protein -
  LSJ_RS02940 (LSJ_0589) yihA 586238..586828 (+) 591 WP_003709878.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  LSJ_RS02945 (LSJ_0590) - 586846..587145 (+) 300 WP_044004725.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  LSJ_RS02950 (LSJ_0591) - 587249..589063 (+) 1815 WP_237752275.1 DUF2207 domain-containing protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 63195.98 Da        Isoelectric Point: 4.8829

>NTDB_id=122012 LSJ_RS02920 WP_044004723.1 583052..584719(+) (recN) [Ligilactobacillus salivarius strain JCM1046]
MLQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRGFTEFIRKGEKKAVIQGLFTLPREANTYNIL
EEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLATLRKVGETLIDIHGQNEHQELMKPENHIDLLDEYDKKTSQLRNQ
YQVVYQNYRKLKLSMEKKEADEKAWAQRLDMLNFQVKEIEEAGLKINEEDELVEEKNKLDNFQAIHDALELSYQILSGEK
IDVVGNLGNAMNELSDVSDLSENLQEINTKISDAFYSLEDAARDISDALDSMEWNGERLNEIEERLELIHQLKRKYGDTI
EDILHYHSRIEKELREMENAEQNSEKQERQLSEALEKVKELAIKLSKQRKKSAKKLEKMIHEQLSALYMDKAVFEVKCLN
NSKLYSKGIDKVEFYIQTNPGEEMGPLAKIASGGELSRIMLALKTIFSQKMGVTSIIFDEVDTGVSGRVAQAIAEKISQI
SNNSQVLCITHLPQVAAIADNHYYISKSVNDGRTETSLKELDEKQKIREIARMLSGSEITELTLKHAEELIKMSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=122012 LSJ_RS02920 WP_044004723.1 583052..584719(+) (recN) [Ligilactobacillus salivarius strain JCM1046]
ATGTTACAAGAATTATCAATAAAGGATTTCGCCATTATAGATGAAATACAAATATCATTTCAACCTAAGATGACAGTATT
GACGGGTGAGACAGGTGCTGGTAAATCAATTATTATTGATGCTCTGGGCTTATTAGCAGGAGGCAGAGGTTTTACTGAAT
TTATTCGTAAGGGTGAGAAAAAAGCTGTTATTCAGGGGTTATTTACATTACCTAGAGAAGCTAATACTTACAACATTTTG
GAAGAATACGGAATAGATTCTGAAGATGGACAAATAATCTTGCAAAGAGATTTATATCGAGGCGGAAGAAATATTTGTCG
CATCAATGGAATGATGGTAAATTTGGCAACTTTACGAAAGGTAGGAGAAACATTAATTGATATTCATGGGCAGAATGAGC
ACCAAGAATTGATGAAGCCAGAAAACCATATAGATTTGTTAGATGAATATGATAAAAAAACATCCCAGTTAAGAAATCAA
TATCAAGTTGTGTATCAAAATTATCGTAAGCTAAAATTATCAATGGAAAAAAAAGAAGCTGATGAGAAGGCCTGGGCCCA
AAGACTAGATATGCTAAATTTCCAAGTCAAAGAAATTGAAGAAGCTGGTTTAAAAATTAATGAAGAAGATGAACTAGTCG
AAGAAAAAAATAAATTGGATAATTTTCAAGCAATACATGATGCTTTAGAATTAAGTTATCAAATTTTATCTGGTGAAAAA
ATAGATGTAGTTGGAAATTTAGGAAATGCAATGAATGAGTTAAGCGATGTTTCAGATTTATCAGAAAATCTTCAAGAAAT
CAATACTAAAATTTCAGATGCTTTTTATAGTCTAGAAGATGCCGCTCGTGATATTTCAGATGCACTTGATTCAATGGAGT
GGAATGGAGAAAGGTTAAATGAAATAGAGGAAAGATTAGAGTTGATCCACCAATTGAAGAGAAAATATGGTGATACAATA
GAGGATATTTTGCATTATCATAGTAGAATTGAAAAAGAATTAAGAGAAATGGAAAATGCGGAACAAAATTCAGAAAAGCA
AGAAAGACAATTATCTGAGGCATTAGAAAAAGTAAAAGAATTGGCAATAAAACTTTCGAAACAGCGGAAGAAAAGCGCTA
AAAAATTAGAAAAAATGATCCATGAACAATTAAGTGCATTATATATGGACAAAGCTGTATTTGAAGTTAAATGTTTAAAT
AATTCTAAATTGTATTCTAAAGGTATCGATAAAGTTGAATTTTATATTCAAACTAATCCAGGTGAAGAAATGGGCCCATT
AGCTAAGATAGCTTCAGGTGGTGAACTTTCACGAATAATGTTAGCTTTAAAAACAATTTTTTCTCAAAAGATGGGTGTCA
CAAGTATTATCTTTGATGAAGTTGATACTGGTGTTAGCGGTCGTGTAGCTCAAGCGATTGCTGAAAAAATAAGCCAAATT
TCAAATAATTCACAAGTTTTATGCATTACTCACTTACCGCAAGTTGCAGCAATTGCAGACAATCATTACTATATTTCAAA
ATCTGTCAACGATGGTAGAACAGAAACTTCATTAAAAGAATTAGATGAAAAGCAAAAAATTAGAGAGATAGCAAGAATGT
TATCTGGATCTGAAATTACAGAATTAACATTGAAACATGCAGAAGAATTAATTAAAATGTCAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089QBY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.252

100

0.497

Multiple sequence alignment