Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EL48_RS05510 Genome accession   NZ_CP007639
Coordinates   1142425..1143030 (+) Length   201 a.a.
NCBI ID   WP_001539651.1    Uniprot ID   A0A5H5BIX2
Organism   Salmonella enterica subsp. enterica serovar Choleraesuis strain C500     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1137425..1148030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL48_RS05490 (EL48_05495) - 1137820..1139580 (-) 1761 WP_001539649.1 AAA family ATPase -
  EL48_RS05495 (EL48_05500) matP 1139766..1140218 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  EL48_RS05500 (EL48_05505) ompA 1140290..1141342 (-) 1053 WP_001539650.1 porin OmpA -
  EL48_RS05505 (EL48_05510) sulA 1141699..1142208 (-) 510 WP_000288731.1 SOS-induced cell division inhibitor SulA -
  EL48_RS05510 (EL48_05515) sxy/tfoX 1142425..1143030 (+) 606 WP_001539651.1 TfoX/Sxy family DNA transformation protein Regulator
  EL48_RS05515 (EL48_05520) yccS 1143017..1145170 (-) 2154 WP_000950883.1 YccS family putative transporter -
  EL48_RS05520 (EL48_05525) - 1145189..1145635 (-) 447 WP_001261222.1 YccF domain-containing protein -
  EL48_RS05525 (EL48_05530) helD 1145759..1147813 (+) 2055 WP_001539652.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=121983 EL48_RS05510 WP_001539651.1 1142425..1143030(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Choleraesuis strain C500]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSITAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=121983 EL48_RS05510 WP_001539651.1 1142425..1143030(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Choleraesuis strain C500]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAGTATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGATTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5H5BIX2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.377

99.005

0.746

Multiple sequence alignment