Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   RC16_RS05460 Genome accession   NZ_CP010468
Coordinates   1035029..1035979 (+) Length   316 a.a.
NCBI ID   WP_002933188.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC064     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1030029..1040979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC16_RS05435 (RC16_05435) - 1030387..1031400 (-) 1014 WP_002932637.1 hypothetical protein -
  RC16_RS05440 (RC16_05440) - 1031471..1032244 (+) 774 WP_002866160.1 glycosyltransferase family 25 protein -
  RC16_RS05445 (RC16_05445) wlaTB 1032237..1033193 (+) 957 WP_002869613.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  RC16_RS05450 (RC16_05450) wlaTC 1033190..1034149 (+) 960 WP_048818625.1 class E lipooligosaccharide biosynthesis protein WlaTC -
  RC16_RS05455 (RC16_05455) - 1034152..1034970 (-) 819 WP_002933186.1 glycosyltransferase family 2 protein -
  RC16_RS05460 (RC16_05460) waaF 1035029..1035979 (+) 951 WP_002933188.1 lipopolysaccharide heptosyltransferase II Regulator
  RC16_RS05465 (RC16_05465) - 1036031..1037530 (+) 1500 WP_002933196.1 MBOAT family O-acyltransferase -
  RC16_RS05470 (RC16_05470) - 1037678..1038655 (+) 978 WP_002933198.1 hypothetical protein -
  RC16_RS05475 (RC16_05475) gmhA 1038659..1039219 (-) 561 WP_002933201.1 D-sedoheptulose 7-phosphate isomerase -
  RC16_RS05480 (RC16_05480) rfaE1 1039216..1040601 (-) 1386 WP_002933204.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36201.62 Da        Isoelectric Point: 10.1851

>NTDB_id=121972 RC16_RS05460 WP_002933188.1 1035029..1035979(+) (waaF) [Campylobacter jejuni strain CJ677CC064]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLHKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLDLACMPCMQKTCPLKHHKCMKDLKPERVIEEIKKLSTP

Nucleotide


Download         Length: 951 bp        

>NTDB_id=121972 RC16_RS05460 WP_002933188.1 1035029..1035979(+) (waaF) [Campylobacter jejuni strain CJ677CC064]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTACAAACAAGCCCTATCTTTACACAAAGAACTTGGTAAAATTGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATATCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGTTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGTCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTTATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCAGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAACGAAAACGCAACATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCATAAATGTATGAAAGATTTAAAGCCTGAAAGAGTGATAGAAGAAATTAAAAAATTAAGCACCCCATAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

95.208

99.051

0.943

Multiple sequence alignment