Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   RC16_RS03345 Genome accession   NZ_CP010468
Coordinates   626214..626597 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC064     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 621214..631597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC16_RS03325 (RC16_03325) - 621293..623227 (-) 1935 WP_002931984.1 ribonuclease R family protein -
  RC16_RS03330 (RC16_03330) ilvC 623346..624368 (+) 1023 WP_002931987.1 ketol-acid reductoisomerase -
  RC16_RS03335 (RC16_03335) - 624372..625454 (+) 1083 WP_002931999.1 divergent polysaccharide deacetylase family protein -
  RC16_RS03340 (RC16_03340) dprA 625444..626217 (+) 774 WP_002932002.1 DNA-processing protein DprA Machinery gene
  RC16_RS03345 (RC16_03345) dprB 626214..626597 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  RC16_RS03350 (RC16_03350) - 626626..627465 (+) 840 WP_072225841.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  RC16_RS03355 (RC16_03355) msrA 627641..628138 (-) 498 WP_002876697.1 peptide-methionine (S)-S-oxide reductase MsrA -
  RC16_RS03360 (RC16_03360) ppa 628179..628697 (-) 519 WP_002855031.1 inorganic diphosphatase -
  RC16_RS03365 (RC16_03365) adk 628707..629285 (-) 579 WP_002855137.1 adenylate kinase -
  RC16_RS03370 (RC16_03370) aspS 629282..631033 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=121963 RC16_RS03345 WP_002856861.1 626214..626597(+) (dprB) [Campylobacter jejuni strain CJ677CC064]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=121963 RC16_RS03345 WP_002856861.1 626214..626597(+) (dprB) [Campylobacter jejuni strain CJ677CC064]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGTGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment