Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   RC47_RS05285 Genome accession   NZ_CP010466
Coordinates   1003287..1003781 (+) Length   164 a.a.
NCBI ID   WP_002933849.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC541     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 998287..1008781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC47_RS05270 (RC47_05270) - 999672..1000850 (-) 1179 WP_002933852.1 metal-dependent hydrolase -
  RC47_RS05275 (RC47_05275) gpsA 1000860..1001756 (-) 897 WP_072225864.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  RC47_RS05280 (RC47_05280) gatB 1001753..1003171 (-) 1419 WP_002933850.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  RC47_RS05285 (RC47_05285) luxS 1003287..1003781 (+) 495 WP_002933849.1 S-ribosylhomocysteine lyase Regulator
  RC47_RS05290 (RC47_05290) - 1004091..1005083 (+) 993 WP_002933848.1 isopenicillin N synthase family oxygenase -
  RC47_RS05295 (RC47_05295) - 1005095..1005865 (+) 771 WP_002933846.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  RC47_RS05300 (RC47_05300) metE 1005877..1008141 (+) 2265 WP_002933844.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18242.27 Da        Isoelectric Point: 6.9497

>NTDB_id=121879 RC47_RS05285 WP_002933849.1 1003287..1003781(+) (luxS) [Campylobacter jejuni strain CJ677CC541]
MPLLDSFKVDHTKMLAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPNEKSIAKAWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=121879 RC47_RS05285 WP_002933849.1 1003287..1003781(+) (luxS) [Campylobacter jejuni strain CJ677CC541]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCTAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGTGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTAATGAGAAAAGTATTGCAAAAGCTTGGGAAGCAGC
TATGAAAGATGTTTTAAGTGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGTGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAAGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707