Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   RB95_RS07870 Genome accession   NZ_CP010465
Coordinates   1503493..1505391 (+) Length   632 a.a.
NCBI ID   WP_002934237.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1498493..1510391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB95_RS07840 (RB95_07825) - 1499158..1499430 (+) 273 WP_002858971.1 NifU family protein -
  RB95_RS07845 (RB95_07830) - 1499417..1499968 (+) 552 WP_002855727.1 hypothetical protein -
  RB95_RS07850 (RB95_07835) murE 1499952..1501235 (+) 1284 WP_002934240.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  RB95_RS07855 (RB95_07840) - 1501239..1501550 (+) 312 WP_002851172.1 YbaB/EbfC family nucleoid-associated protein -
  RB95_RS07860 (RB95_07845) - 1501547..1502641 (+) 1095 WP_002934239.1 PDZ domain-containing protein -
  RB95_RS07865 (RB95_07850) ispA 1502638..1503483 (+) 846 WP_002934238.1 polyprenyl synthetase family protein -
  RB95_RS07870 (RB95_07855) recP/tkt 1503493..1505391 (+) 1899 WP_002934237.1 transketolase Machinery gene
  RB95_RS07875 (RB95_07860) iamB 1505393..1506502 (+) 1110 WP_002934235.1 MlaE family lipid ABC transporter permease subunit -
  RB95_RS07880 (RB95_07865) iamA 1506503..1507225 (+) 723 WP_002934234.1 ATP-binding cassette domain-containing protein -
  RB95_RS07885 (RB95_07870) - 1507228..1508118 (+) 891 WP_002856572.1 MlaD family protein -
  RB95_RS07890 (RB95_07875) - 1508118..1508717 (+) 600 WP_002934233.1 ABC-type transport auxiliary lipoprotein family protein -
  RB95_RS07895 (RB95_07880) - 1508773..1509273 (+) 501 WP_002868879.1 flagellar FLiS export co-chaperone -
  RB95_RS07900 (RB95_07885) map 1509601..1510359 (-) 759 WP_002934232.1 type I methionyl aminopeptidase -

Sequence

Protein


Download         Length: 632 a.a.        Molecular weight: 69617.42 Da        Isoelectric Point: 6.3155

>NTDB_id=121853 RB95_RS07870 WP_002934237.1 1503493..1505391(+) (recP/tkt) [Campylobacter jejuni strain CJ677CC008]
MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG
YDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAKT
TIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDPNISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSGKKELLERL
LNPDFSKIAYPDFKGKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHGMGDFVEGKNIHFGIREHAMAAINNA
FARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENV
KAWQIALNADIPSAFVLSRQKLKALNEPIFGDVKNGAYLLKESKDAKFTLLASGSEVWLCLESANELEKQGFACNVVSMP
CFELFEKQDKTYQERLLKGEVIGVEAAYSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSKLINFILSK

Nucleotide


Download         Length: 1899 bp        

>NTDB_id=121853 RB95_RS07870 WP_002934237.1 1503493..1505391(+) (recP/tkt) [Campylobacter jejuni strain CJ677CC008]
ATGGACATTCAAATTTTACAAGAACAGGCAAATACCCTAAGATTTTTAAGTGCCGATATGGTGCAAAAAGCAAACTCAGG
ACACCCAGGTGCACCTTTGGGTTTAGCAGATATTTTAAGTGTTTTAAGTTATCATTTAAAACACAATCCTAAAAATCCCA
CTTGGCTAAACCGTGATAGACTTGTATTTTCAGGCGGACATGCAAGTGCTTTGCTTTATAGTTTTTTACATTTAAGTGGC
TATGATTTAAGCTTGGAAGATCTTAAAAATTTCCGCCAACTTCATTCTAAAACCCCTGGACACCCTGAAATTTCAACTCT
TGGAGTAGAAATCGCTACAGGCCCTTTAGGACAAGGCGTTGCAAACGCTGTAGGCTTTGCTATGGCAGCAAAAAAAGCGC
AAAATTTGCTAGGTAGTGATTTAATCGATCATAAAATTTATTGTCTTTGCGGAGATGGGGATTTACAAGAAGGCATTTCT
TATGAAGCTTGTTCTTTAGCAGGACTTCACAAACTTGATAATTTCATACTTATTTACGATAGCAACAATATCTCCATAGA
AGGCGATGTAGGTTTAGCCTTTAATGAAAATGTAAAAATGCGTTTTGAAGCACAAGGATTTGAAGTTTTAAGTATAAATG
GACACGATTATGAAGAAATTAATAAAGCCTTAGAACAAGCTAAAAAATCCACAAAACCTTGTCTTATCATCGCAAAAACA
ACTATAGCAAAGGGTGCAGGAGAGCTTGAAGGCAGTCATAAAAGCCATGGCGCACCTTTGGGCGAAGAAGTGATTAAAAA
AGCCAAAGAACAAGCAGGTTTTGATCCAAATATCAGTTTTCATATCCCACAAGCAAGCAAAATCCGCTTTGAAAGCGCTG
TAGAACTTGGGGATTTAGAAGAAGCAAAATGGAAAGATAAACTTGAAAAAAGTGGTAAAAAAGAACTTTTAGAAAGGCTA
TTAAACCCTGATTTTAGCAAGATAGCTTATCCTGATTTTAAAGGAAAAGATCTTGCTACAAGAGATAGTAATGGTGAAAT
TTTAAATGTTTTAGCTAAAAATTTAGAAGGATTTTTAGGTGGAAGTGCGGATTTAGGCCCTTCAAACAAAACAGAACTTC
ACGGCATGGGAGACTTTGTAGAAGGTAAAAATATCCATTTTGGTATCAGAGAACACGCTATGGCAGCGATTAACAATGCT
TTTGCAAGATATGGAATTTTCTTACCATTTTCGGCAACTTTTTTCATCTTTAGTGAGTACTTAAAACCTGCCGCAAGAAT
AGCAGCCCTAATGAAAATCAAACATTTTTTTATTTTCACGCACGACAGCATAGGCGTGGGCGAAGATGGCCCAACACACC
AGCCTATAGAACAACTTAGCACTTTTAGAGCTATGCCAAATTTTTTAACCTTTAGGCCTGCTGATGGGGTAGAAAATGTC
AAAGCTTGGCAAATAGCCCTAAATGCTGATATTCCAAGTGCTTTTGTGCTTTCACGCCAAAAACTCAAAGCTCTAAATGA
ACCTATTTTTGGAGATGTAAAAAACGGAGCGTATTTACTCAAAGAAAGCAAAGACGCTAAATTTACACTTCTAGCAAGTG
GAAGTGAAGTTTGGCTTTGTCTAGAAAGTGCAAACGAACTTGAAAAACAAGGTTTTGCTTGTAATGTTGTTTCTATGCCT
TGTTTTGAACTTTTTGAAAAACAAGATAAAACTTATCAAGAAAGATTGTTAAAAGGTGAAGTTATAGGCGTTGAAGCAGC
GTATTCTAATGAACTTTATAAATTTTGCCACAAAGTGTATGGCATCGAAAGTTTTGGAGAAAGTGGTAAAGACAAAGATG
TGTTTGAACACTTTGGATTTAGTGTTTCAAAGCTTATAAATTTTATCCTTAGCAAATAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(522-623)

Transketolase, pyrimidine binding domain (Transket_pyr)

(338-503)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.432

100

0.415

Multiple sequence alignment