Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MA06_RS25060 Genome accession   NZ_CP007626
Coordinates   4557404..4557682 (+) Length   92 a.a.
NCBI ID   WP_003197260.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain 219298     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4552404..4562682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA06_RS25040 (DJ92_4672) - 4553681..4554136 (+) 456 WP_040119454.1 GNAT family N-acetyltransferase -
  MA06_RS25045 (DJ92_4673) - 4554545..4555129 (-) 585 WP_006097544.1 HAD-IA family hydrolase -
  MA06_RS25050 (DJ92_4674) - 4555441..4556022 (+) 582 WP_018765517.1 DUF4256 domain-containing protein -
  MA06_RS25055 (DJ92_4675) - 4556281..4556691 (+) 411 Protein_4583 restriction endonuclease -
  MA06_RS31305 (DJ92_4676) - 4556990..4557160 (-) 171 WP_003197259.1 hypothetical protein -
  MA06_RS25060 (DJ92_4677) abrB 4557404..4557682 (+) 279 WP_003197260.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MA06_RS25065 (DJ92_4678) - 4557991..4558287 (+) 297 WP_033799504.1 transposase -
  MA06_RS25070 (DJ92_4679) - 4558296..4559177 (+) 882 WP_040119455.1 IS3 family transposase -
  MA06_RS25075 (DJ92_4680) - 4559314..4559988 (-) 675 WP_040119456.1 hypothetical protein -
  MA06_RS32150 - 4560519..4560617 (-) 99 Protein_4589 SAM-dependent methyltransferase -
  MA06_RS25080 (DJ92_4681) - 4561046..4561366 (+) 321 WP_018765521.1 PadR family transcriptional regulator -
  MA06_RS25085 (DJ92_4682) - 4561438..4561779 (+) 342 WP_003207016.1 DUF1048 domain-containing protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10108.87 Da        Isoelectric Point: 6.3501

>NTDB_id=121791 MA06_RS25060 WP_003197260.1 4557404..4557682(+) (abrB) [Bacillus pseudomycoides strain 219298]
MKSTGVTRKLDQLGRIVIPMELRRTLAIEEKTPLEIYVEGEKIILKKYEANGACAITGEVSDKNISLADGKITLSPAGAE
LIIEELQKNLVK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=121791 MA06_RS25060 WP_003197260.1 4557404..4557682(+) (abrB) [Bacillus pseudomycoides strain 219298]
ATGAAATCAACAGGAGTAACTCGAAAATTAGATCAATTAGGACGTATAGTTATACCAATGGAGTTAAGACGCACGCTGGC
AATTGAAGAAAAGACACCATTAGAGATTTATGTAGAAGGTGAAAAGATTATCTTGAAAAAATATGAAGCGAATGGTGCTT
GTGCAATAACAGGAGAAGTATCTGATAAAAATATTTCTTTAGCAGACGGAAAGATTACGCTAAGCCCAGCAGGTGCAGAA
CTTATAATAGAGGAATTACAGAAGAATCTTGTAAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

65.556

97.826

0.641

Multiple sequence alignment