Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MA06_RS22755 Genome accession   NZ_CP007626
Coordinates   4093291..4093893 (-) Length   200 a.a.
NCBI ID   WP_003196400.1    Uniprot ID   A0A2H3MF56
Organism   Bacillus pseudomycoides strain 219298     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4088291..4098893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA06_RS22735 (DJ92_4196) dnaD 4088600..4089307 (+) 708 WP_016114116.1 DNA replication protein DnaD -
  MA06_RS22740 (DJ92_4197) nth 4089323..4089970 (+) 648 WP_006094317.1 endonuclease III -
  MA06_RS22745 (DJ92_4198) - 4089975..4090493 (+) 519 WP_040119344.1 YpoC family protein -
  MA06_RS22750 (DJ92_4199) - 4090517..4093225 (-) 2709 WP_040119345.1 PBP1A family penicillin-binding protein -
  MA06_RS22755 (DJ92_4200) recU 4093291..4093893 (-) 603 WP_003196400.1 Holliday junction resolvase RecU Machinery gene
  MA06_RS22760 (DJ92_4201) - 4093997..4095022 (+) 1026 WP_040119346.1 DUF2515 domain-containing protein -
  MA06_RS22765 (DJ92_4203) - 4095456..4095698 (+) 243 WP_003206610.1 hypothetical protein -
  MA06_RS22770 (DJ92_4204) - 4095714..4096058 (+) 345 WP_003206608.1 YppE family protein -
  MA06_RS22775 (DJ92_4205) - 4096082..4096273 (-) 192 WP_006094322.1 YppF family protein -
  MA06_RS22780 (DJ92_4206) - 4096449..4096913 (+) 465 WP_040119347.1 YppG family protein -
  MA06_RS22785 (DJ92_4207) - 4097065..4097514 (+) 450 WP_040119348.1 CotD family spore coat protein -
  MA06_RS22790 (DJ92_4208) - 4097571..4098125 (+) 555 WP_040119349.1 DUF1273 domain-containing protein -
  MA06_RS22795 (DJ92_4209) gpsB 4098223..4098558 (+) 336 WP_016114126.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23536.87 Da        Isoelectric Point: 9.6125

>NTDB_id=121790 MA06_RS22755 WP_003196400.1 4093291..4093893(-) (recU) [Bacillus pseudomycoides strain 219298]
MTIRYPNGKRYNQALQPQKTQFKKHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIKHMEQVIAHNGIAFVIIKFTLYDEFYLLDAKHVVSFWNRQ
DAGGRKSIKKQEIEEHGYLLSCGYHPRIDYIRVLDMAYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=121790 MA06_RS22755 WP_003196400.1 4093291..4093893(-) (recU) [Bacillus pseudomycoides strain 219298]
ATGACCATTCGTTATCCAAACGGAAAAAGGTATAATCAAGCGTTACAACCTCAAAAAACACAATTTAAAAAACATACTTA
TAGCAATAGAGGTATGTCTCTGGAAGAGGAACTAAATGAAACAAATCAATATTATTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCCACTCCTCTTCAAATTGTAAAAGTGGATTACCCCGCTCGAAGTGCGGCGGTTGTGAAAGAAGCTTATTTT
AAACAGCCTTCTACAACAGACTACAACGGTGTATACAAGGGGAAATACATTGACTTCGAAGCGAAAGAAACAAAAAATAA
AACAAGTTTTCCGCTACAAAATTTCCATCTTCATCAAATTAAGCATATGGAACAAGTAATAGCTCATAACGGAATTGCAT
TTGTTATTATTAAATTTACACTTTATGACGAGTTTTATTTACTTGATGCGAAACATGTCGTTTCATTTTGGAATCGCCAA
GATGCTGGTGGACGCAAATCGATTAAGAAACAGGAAATCGAAGAGCACGGATACTTGTTATCATGCGGTTATCACCCTCG
AATTGATTATATTCGTGTACTAGACATGGCTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H3MF56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63

Multiple sequence alignment