Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MA06_RS21425 Genome accession   NZ_CP007626
Coordinates   3839543..3839866 (-) Length   107 a.a.
NCBI ID   WP_003196031.1    Uniprot ID   A0AAJ1Z072
Organism   Bacillus pseudomycoides strain 219298     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3834543..3844866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA06_RS21400 (DJ92_3924) - 3835221..3835796 (+) 576 WP_016113886.1 signal peptidase I -
  MA06_RS29680 - 3835897..3836047 (+) 151 Protein_3827 TasA family protein -
  MA06_RS21405 (DJ92_3925) - 3836358..3837128 (+) 771 WP_242412204.1 DUF4047 domain-containing protein -
  MA06_RS21410 (DJ92_3926) - 3837290..3837880 (+) 591 WP_006094072.1 CalY family protein -
  MA06_RS21415 (DJ92_3927) - 3837954..3838622 (+) 669 WP_018781073.1 TasA family protein -
  MA06_RS21420 (DJ92_3928) calY 3838853..3839446 (+) 594 WP_003196030.1 biofilm matrix protein CalY -
  MA06_RS21425 (DJ92_3929) sinR 3839543..3839866 (-) 324 WP_003196031.1 helix-turn-helix domain-containing protein Regulator
  MA06_RS21430 (DJ92_3930) - 3839949..3840080 (-) 132 WP_003196032.1 anti-repressor SinI family protein -
  MA06_RS21435 (DJ92_3931) - 3840447..3842828 (+) 2382 WP_040119324.1 immune inhibitor A domain-containing protein -
  MA06_RS21440 (DJ92_3932) - 3843157..3844524 (+) 1368 WP_018781071.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12465.32 Da        Isoelectric Point: 9.6883

>NTDB_id=121788 MA06_RS21425 WP_003196031.1 3839543..3839866(-) (sinR) [Bacillus pseudomycoides strain 219298]
MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQIPVDTLLHDEIPSENQLDSEWTHLV
KEAMNSGVSKEQFREFLEFTKWKRNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=121788 MA06_RS21425 WP_003196031.1 3839543..3839866(-) (sinR) [Bacillus pseudomycoides strain 219298]
ATGATAGGAGAACGTATAAAACGCCTTCGGTTGCAAAGAGGGATTTCTTTAACAGAACTTGCTGAAAAAGCAGGTGTTGC
AAAGTCTTATATTAGTTCCATTGAACGTAATTTACAAAAGAACCCTTCCATTCAATTTCTTGAAAAAATTGCTAATGTTC
TGCAAATTCCCGTGGATACGCTCCTTCATGACGAAATACCATCCGAAAATCAATTGGATTCGGAATGGACACATCTCGTC
AAAGAAGCCATGAACTCCGGTGTATCAAAAGAACAGTTTCGTGAATTTTTAGAGTTTACAAAATGGAAGAGAAATCAGAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

65.138

100

0.664

Multiple sequence alignment