Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MA06_RS16935 Genome accession   NZ_CP007626
Coordinates   2870553..2871506 (+) Length   317 a.a.
NCBI ID   WP_040119632.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain 219298     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2865553..2876506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA06_RS16930 (DJ92_3003) - 2867698..2869890 (-) 2193 WP_003205730.1 DNA topoisomerase III -
  MA06_RS16935 (DJ92_3004) ceuB 2870553..2871506 (+) 954 WP_040119632.1 ABC transporter permease Machinery gene
  MA06_RS16940 (DJ92_3005) - 2871496..2872467 (+) 972 WP_018782595.1 iron chelate uptake ABC transporter family permease subunit -
  MA06_RS16945 (DJ92_3006) - 2872461..2873219 (+) 759 WP_018782594.1 ABC transporter ATP-binding protein -
  MA06_RS16950 (DJ92_3007) - 2873293..2874240 (+) 948 WP_018782593.1 siderophore ABC transporter substrate-binding protein -
  MA06_RS16955 (DJ92_3008) thiM 2874700..2875518 (+) 819 WP_339326080.1 hydroxyethylthiazole kinase -
  MA06_RS16960 (DJ92_3009) thiE 2875534..2876199 (+) 666 WP_018782591.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35093.41 Da        Isoelectric Point: 10.1714

>NTDB_id=121776 MA06_RS16935 WP_040119632.1 2870553..2871506(+) (ceuB) [Bacillus pseudomycoides strain 219298]
MKKRYLFIMLIVLSIVSIFIGVKEVNLADILHWNQEKMQIVFISRLPRLISIIVAGVSLSISGLIMQQLSRNKFVSPTTA
GTMDSAKLGVLVSLMLFTTASPLEKMFVAFVFALAGTFLFMQILKRIKFKDAIFIPLVGIMFGNIISSITTFFAYKYDLI
QNISAWLQGDFSMVMKGRYEILYLSIPLVIIAFLYANRFTVAGMGEDFAANLGMNYNRVLNIGLIIVSLISALVVLTVGM
IPFLGLIIPNIVSIYRGDNLKNSLPHTALLGAVFVLACDILGRVVIYPYEISIGLTVGVIGSGIFLYLLMRRNAYAA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=121776 MA06_RS16935 WP_040119632.1 2870553..2871506(+) (ceuB) [Bacillus pseudomycoides strain 219298]
ATGAAAAAGAGATATTTGTTTATCATGCTTATTGTTTTATCAATTGTGTCTATTTTTATCGGTGTAAAAGAGGTTAATCT
AGCAGATATTTTGCACTGGAATCAAGAAAAAATGCAAATTGTATTTATTAGTAGATTACCACGTCTAATCAGTATTATTG
TTGCTGGTGTTAGCTTAAGTATAAGTGGTTTAATTATGCAGCAACTTAGCAGAAATAAATTTGTATCCCCGACAACTGCG
GGGACAATGGATAGTGCAAAGCTAGGGGTTTTAGTTTCATTGATGCTATTCACGACAGCGAGCCCGCTTGAAAAAATGTT
TGTTGCATTTGTCTTTGCATTAGCTGGTACATTTTTATTTATGCAAATTTTGAAGAGAATTAAGTTTAAGGATGCGATTT
TTATCCCGCTTGTGGGAATTATGTTTGGGAACATTATCAGCTCTATAACGACATTCTTTGCTTATAAATACGACCTAATT
CAGAACATTTCTGCATGGCTACAAGGGGATTTTTCAATGGTGATGAAAGGAAGATATGAAATTTTATATTTAAGTATCCC
ACTTGTCATTATCGCCTTCTTATATGCAAATCGATTTACAGTTGCTGGAATGGGTGAAGATTTTGCGGCCAACTTAGGGA
TGAATTACAACCGAGTGCTAAATATCGGGCTAATTATCGTTTCTTTAATCTCCGCATTAGTTGTTTTGACTGTTGGTATG
ATTCCATTTCTAGGGCTTATTATTCCGAATATTGTTTCTATTTATCGTGGAGATAATTTAAAGAATAGTTTACCTCATAC
TGCTTTACTAGGAGCGGTCTTTGTACTTGCTTGCGATATACTTGGCCGCGTCGTTATTTATCCGTACGAGATTTCTATTG
GCCTTACAGTGGGAGTAATTGGAAGCGGAATCTTCCTTTATTTATTGATGAGGAGAAACGCATATGCAGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.591

98.738

0.549

Multiple sequence alignment