Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MA06_RS14885 Genome accession   NZ_CP007626
Coordinates   2471774..2472901 (+) Length   375 a.a.
NCBI ID   WP_003194147.1    Uniprot ID   A0AAJ3R8C5
Organism   Bacillus pseudomycoides strain 219298     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2466774..2477901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA06_RS14855 (DJ92_2581) spoIIIJ 2466809..2467576 (-) 768 WP_018782457.1 YidC family membrane integrase SpoIIIJ -
  MA06_RS14860 (DJ92_2582) rnpA 2467635..2467982 (-) 348 WP_016112830.1 ribonuclease P protein component -
  MA06_RS14865 (DJ92_2583) rpmH 2468059..2468193 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  MA06_RS14870 (DJ92_2584) dnaA 2468757..2470097 (+) 1341 WP_003194153.1 chromosomal replication initiator protein DnaA -
  MA06_RS14875 (DJ92_2585) dnaN 2470276..2471421 (+) 1146 WP_003194151.1 DNA polymerase III subunit beta -
  MA06_RS14880 (DJ92_2586) yaaA 2471549..2471761 (+) 213 WP_003194149.1 S4 domain-containing protein YaaA -
  MA06_RS14885 (DJ92_2587) recF 2471774..2472901 (+) 1128 WP_003194147.1 DNA replication/repair protein RecF Machinery gene
  MA06_RS14890 (DJ92_2588) gyrB 2472940..2474862 (+) 1923 WP_006096802.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  MA06_RS14895 (DJ92_2589) gyrA 2474951..2477422 (+) 2472 WP_018782458.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43571.83 Da        Isoelectric Point: 6.7807

>NTDB_id=121769 MA06_RS14885 WP_003194147.1 2471774..2472901(+) (recF) [Bacillus pseudomycoides strain 219298]
MYIKELQLKNYRNYEYLDLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGKIKGRLQKRNSS
LSLELNISKKGKKAKLNQLEQQRLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNDKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKQAKTIHVTNGTVDCEIDRT

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=121769 MA06_RS14885 WP_003194147.1 2471774..2472901(+) (recF) [Bacillus pseudomycoides strain 219298]
TTGTATATTAAAGAATTACAATTAAAAAATTATCGCAATTATGAATATCTGGATCTCTCCTTTGAGGATAAAGTGAATGT
AATTATTGGTGAAAATGCTCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTATTAGCGATGGCCAAGTCTCATCGAA
CTTCGAACGATCGTGAACTTATCCGGTGGGATGAGGATTATGGTAAAATAAAAGGTAGATTACAAAAGCGAAACAGTTCC
TTGTCTTTAGAATTAAATATTTCTAAAAAAGGGAAGAAGGCAAAATTAAATCAGCTAGAACAACAAAGGTTAAGCCAATA
TATTGGTGAAATGAATGTTGTTATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTACGAAGACGCT
TTTTAGATATGGAACTTGGACAAATAGCTCCTGTCTATTTGTATGAGTTAAGTCAATATCAAAAAGTGCTCACGCAGCGA
AATCACTTGCTTAAAAAAATGCAAGGGAATAGTAAAAATGAGGAAACGATGTTGGATGTATTTACACTGCAACTCATTGA
ACATGGTACAAAAATTTTGCAAAAACGTTTTGAGTTTCTGCATTTATTACAAGAATGGGCTGCCCCAATCCATCGTGGCA
TTAGTAGGGGATTAGAGGAACTAGAAATAGTCTATAAACCGAGCGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACAACTTTAATTGGTCCTCATCG
TGACGATTTACAATTCTTCGTTAATGATAAAAATGTTCAAGTCTTTGGTTCACAAGGGCAACAACGAACAACCGCACTTT
CCCTAAAGTTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAAGAATATCCAATCCTCTTATTAGATGATGTGTTATCA
GAGTTAGATGATTATCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACAAGTGT
CGACGGAATTGAACACGAAACATTAAAGCAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGACA
GAACATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

67.391

98.133

0.661

Multiple sequence alignment