Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MA06_RS08995 Genome accession   NZ_CP007626
Coordinates   1313478..1314224 (-) Length   248 a.a.
NCBI ID   WP_016116361.1    Uniprot ID   A0A1S9X662
Organism   Bacillus pseudomycoides strain 219298     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1308478..1319224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA06_RS08975 (DJ92_1397) dnaG 1309212..1311008 (-) 1797 WP_006095997.1 DNA primase -
  MA06_RS08980 - 1311047..1311505 (-) 459 Protein_1417 YaiI/YqxD family protein -
  MA06_RS08985 (DJ92_1400) - 1311896..1312708 (-) 813 WP_003200663.1 pyruvate, water dikinase regulatory protein -
  MA06_RS08990 (DJ92_1401) - 1312738..1313370 (-) 633 WP_026008574.1 helix-turn-helix transcriptional regulator -
  MA06_RS08995 (DJ92_1402) recO 1313478..1314224 (-) 747 WP_016116361.1 DNA repair protein RecO Machinery gene
  MA06_RS29090 (DJ92_1403) - 1314258..1314401 (-) 144 WP_000883924.1 YqzL family protein -
  MA06_RS09000 (DJ92_1404) era 1314511..1315416 (-) 906 WP_018765845.1 GTPase Era -
  MA06_RS09005 (DJ92_1405) - 1315409..1315807 (-) 399 WP_006095994.1 cytidine deaminase -
  MA06_RS09010 (DJ92_1406) - 1315911..1316264 (-) 354 WP_018782552.1 diacylglycerol kinase family protein -
  MA06_RS09015 (DJ92_1407) ybeY 1316261..1316731 (-) 471 WP_018782551.1 rRNA maturation RNase YbeY -
  MA06_RS09020 (DJ92_1408) - 1316728..1318872 (-) 2145 WP_040119623.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28464.00 Da        Isoelectric Point: 8.0646

>NTDB_id=121753 MA06_RS08995 WP_016116361.1 1313478..1314224(-) (recO) [Bacillus pseudomycoides strain 219298]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASISQLMMHGHFLIQMGSGLGTLQQGEIISSMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLHQTLHYMCEGVDAEVLSLIYQTKMLPVLGMHPYFDTCAICHQEAD
FVAFSVREGGFLCSRHAQQDPYRIPVGEAVHKLLRLFYHFDLARLGNVSVKDGTKRQIRTVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=121753 MA06_RS08995 WP_016116361.1 1313478..1314224(-) (recO) [Bacillus pseudomycoides strain 219298]
ATGTTTCAAAAAGTTGAGGGAATTGTCATCCGGACAACAGATTACGGAGAAACGAATAAAATTGTTACGATATTTTCCCG
TGAGCTTGGAAAGGTAAGTGCAATGGCAAGAGGGGCGAAAAAACCGAAAAGTAGGTTAGCATCTATTTCGCAACTTATGA
TGCACGGTCACTTTCTGATTCAAATGGGGTCTGGACTTGGGACTTTGCAACAAGGTGAAATAATTTCATCTATGAAAGAA
ATTCGTGAAGATATATTTTTAACTGCTTATGCATCATTTATCGTGGAATTGACCGATAAAGCAACTGAAGATAAGAAACA
TAATCCGTATTTATTTGAAATGTTACATCAAACGTTGCACTATATGTGTGAGGGTGTTGATGCTGAAGTATTGTCTTTAA
TTTATCAAACGAAAATGCTCCCAGTACTAGGGATGCATCCATACTTTGATACATGTGCAATTTGTCACCAAGAAGCAGAT
TTTGTCGCCTTCTCTGTCCGAGAAGGCGGTTTTCTGTGCTCGCGTCATGCGCAGCAAGATCCATACCGTATTCCGGTGGG
AGAGGCTGTTCATAAATTGCTACGTCTCTTTTATCATTTTGATTTAGCTCGCCTTGGTAATGTATCTGTTAAGGATGGAA
CGAAGCGGCAAATACGTACAGTATTAAATACATATTATGATGAATATTGCGGAATCTATTTGAAATCAAGGCGTTTTCTT
GAACAACTTGATAAATTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9X662

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.061

99.597

0.548

Multiple sequence alignment