Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MA06_RS04090 Genome accession   NZ_CP007626
Coordinates   346232..346510 (-) Length   92 a.a.
NCBI ID   WP_006095231.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain 219298     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 341232..351510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA06_RS04070 (DJ92_381) - 341939..342853 (-) 915 WP_040118879.1 D-alanine--D-alanine ligase -
  MA06_RS04075 (DJ92_382) - 342865..344307 (-) 1443 WP_006095235.1 PLP-dependent aminotransferase family protein -
  MA06_RS31770 - 344843..345016 (+) 174 WP_224796121.1 methyltransferase domain-containing protein -
  MA06_RS04080 (DJ92_383) - 345235..345570 (+) 336 WP_080740020.1 hypothetical protein -
  MA06_RS04085 (DJ92_384) hfq 345838..346026 (-) 189 WP_006095232.1 RNA chaperone Hfq -
  MA06_RS04090 (DJ92_385) abrB 346232..346510 (-) 279 WP_006095231.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MA06_RS31065 (DJ92_386) - 346747..346917 (+) 171 WP_018781817.1 hypothetical protein -
  MA06_RS32305 - 347094..347225 (+) 132 WP_277915080.1 hypothetical protein -
  MA06_RS04095 (DJ92_387) - 347389..350172 (+) 2784 WP_040118881.1 dynamin family protein -
  MA06_RS28835 - 350244..350390 (-) 147 Protein_401 transposase -
  MA06_RS04100 (DJ92_388) - 350521..351435 (-) 915 WP_018781819.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10207.07 Da        Isoelectric Point: 9.9075

>NTDB_id=121745 MA06_RS04090 WP_006095231.1 346232..346510(-) (abrB) [Bacillus pseudomycoides strain 219298]
MKTTGMTRKVDQLGRVVIPKELRNTLGIKEKSPLEIFIKGEDIVLQKYQPGGVCAVTGEVLNRNISLANDKITLSPEGAK
LLIKDLEQYLVK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=121745 MA06_RS04090 WP_006095231.1 346232..346510(-) (abrB) [Bacillus pseudomycoides strain 219298]
ATGAAAACAACCGGAATGACTAGAAAAGTAGATCAATTAGGGCGTGTGGTAATCCCAAAGGAACTTAGAAATACGCTAGG
TATTAAAGAAAAATCACCATTAGAAATCTTTATAAAAGGTGAAGACATTGTTTTACAGAAGTATCAGCCTGGTGGTGTTT
GTGCAGTAACAGGAGAAGTATTAAATCGTAACATATCATTAGCAAATGACAAGATAACATTAAGTCCAGAGGGTGCAAAA
CTGTTAATAAAGGACTTAGAACAGTATCTTGTAAAATAA

Domains

Predicted by InterProScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

97.826

0.543

Multiple sequence alignment