Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DJ48_RS21720 Genome accession   NZ_CP007618
Coordinates   4017367..4018494 (-) Length   375 a.a.
NCBI ID   WP_000470751.1    Uniprot ID   -
Organism   Bacillus anthracis strain 2000031021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4012367..4023494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ48_RS21710 (DJ48_4242) gyrA 4012846..4015317 (-) 2472 WP_001282851.1 DNA gyrase subunit A -
  DJ48_RS21715 (DJ48_4243) gyrB 4015406..4017328 (-) 1923 WP_000435993.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  DJ48_RS21720 (DJ48_4244) recF 4017367..4018494 (-) 1128 WP_000470751.1 DNA replication/repair protein RecF Machinery gene
  DJ48_RS21725 (DJ48_4245) yaaA 4018507..4018719 (-) 213 WP_000821367.1 S4 domain-containing protein YaaA -
  DJ48_RS21730 (DJ48_4246) dnaN 4018847..4019986 (-) 1140 WP_001212527.1 DNA polymerase III subunit beta -
  DJ48_RS21735 (DJ48_4247) dnaA 4020165..4021505 (-) 1341 WP_000428021.1 chromosomal replication initiator protein DnaA -
  DJ48_RS21740 (DJ48_4248) rpmH 4022070..4022204 (+) 135 WP_000831908.1 50S ribosomal protein L34 -
  DJ48_RS21745 (DJ48_4249) rnpA 4022281..4022640 (+) 360 WP_000726628.1 ribonuclease P protein component -
  DJ48_RS21750 (DJ48_4250) spoIIIJ 4022680..4023447 (+) 768 WP_000727750.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43319.69 Da        Isoelectric Point: 6.7809

>NTDB_id=121702 DJ48_RS21720 WP_000470751.1 4017367..4018494(-) (recF) [Bacillus anthracis strain 2000031021]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFLGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=121702 DJ48_RS21720 WP_000470751.1 4017367..4018494(-) (recF) [Bacillus anthracis strain 2000031021]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAAGTAAATGT
AATTATCGGCGAGAACGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTATGTTTTGGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGTGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGAAAGTTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATCTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCGTGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGCCAAATAGCTCCGGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACACAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTACAAAAATATTGCGAAAACGCTTTGAGTTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCGAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCAGTGAAACAACGTGAAATTTTCCTTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTGATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTACTCGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.033

98.133

0.648

Multiple sequence alignment