Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DJ48_RS21520 Genome accession   NZ_CP007618
Coordinates   3980805..3981089 (+) Length   94 a.a.
NCBI ID   WP_000843035.1    Uniprot ID   A0A6L7HTM5
Organism   Bacillus anthracis strain 2000031021     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3975805..3986089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ48_RS21505 (DJ48_4201) rnmV 3976627..3977184 (-) 558 WP_000692830.1 ribonuclease M5 -
  DJ48_RS21510 (DJ48_4202) - 3977399..3978166 (-) 768 WP_000895847.1 TatD family hydrolase -
  DJ48_RS21515 (DJ48_4203) metG 3978332..3980314 (-) 1983 WP_000134128.1 methionine--tRNA ligase -
  DJ48_RS21520 (DJ48_4204) abrB 3980805..3981089 (+) 285 WP_000843035.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DJ48_RS21525 (DJ48_4205) rsmI 3981110..3981985 (-) 876 WP_000267808.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  DJ48_RS21530 (DJ48_4206) - 3981954..3982244 (-) 291 WP_000414342.1 GIY-YIG nuclease family protein -
  DJ48_RS21535 (DJ48_4207) - 3982231..3982971 (-) 741 WP_001055363.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DJ48_RS21540 (DJ48_4208) yabA 3983092..3983442 (-) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  DJ48_RS21545 (DJ48_4209) - 3983457..3984284 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  DJ48_RS21550 (DJ48_4210) holB 3984290..3985273 (-) 984 WP_000169577.1 DNA polymerase III subunit delta' -
  DJ48_RS21555 (DJ48_4211) tmk 3985309..3985935 (-) 627 WP_000677237.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10550.27 Da        Isoelectric Point: 4.7174

>NTDB_id=121700 DJ48_RS21520 WP_000843035.1 3980805..3981089(+) (abrB) [Bacillus anthracis strain 2000031021]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLFLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=121700 DJ48_RS21520 WP_000843035.1 3980805..3981089(+) (abrB) [Bacillus anthracis strain 2000031021]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATTTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7HTM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment