Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DF16_RS20330 Genome accession   NZ_CP007607
Coordinates   3905133..3905420 (-) Length   95 a.a.
NCBI ID   WP_000648325.1    Uniprot ID   A0A9W5QIM5
Organism   Bacillus thuringiensis serovar kurstaki str. YBT-1520     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3900133..3910420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF16_RS20300 (DF16_orf04087) - 3900535..3900897 (-) 363 WP_001198794.1 DUF805 domain-containing protein -
  DF16_RS36910 - 3901041..3901247 (-) 207 WP_001101741.1 hypothetical protein -
  DF16_RS20310 (DF16_orf04089) - 3901296..3902471 (-) 1176 WP_001082497.1 MFS transporter -
  DF16_RS20315 (DF16_orf04090) - 3902519..3903454 (-) 936 WP_000874082.1 aldo/keto reductase -
  DF16_RS20320 (DF16_orf04091) - 3903561..3903869 (+) 309 WP_001259906.1 helix-turn-helix transcriptional regulator -
  DF16_RS20325 (DF16_orf04092) - 3903911..3904858 (-) 948 WP_000099756.1 serine protease -
  DF16_RS20330 (DF16_orf04093) abrB 3905133..3905420 (-) 288 WP_000648325.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DF16_RS20335 (DF16_orf04094) - 3905536..3907416 (-) 1881 WP_001026002.1 ABC transporter permease -
  DF16_RS20340 (DF16_orf04095) nadE 3907692..3908510 (+) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  DF16_RS20345 (DF16_orf04096) - 3908560..3909021 (-) 462 WP_000024999.1 NUDIX hydrolase -
  DF16_RS20350 (DF16_orf04097) - 3909053..3909250 (-) 198 WP_001048102.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10529.28 Da        Isoelectric Point: 5.1367

>NTDB_id=121657 DF16_RS20330 WP_000648325.1 3905133..3905420(-) (abrB) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSGQNITLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=121657 DF16_RS20330 WP_000648325.1 3905133..3905420(-) (abrB) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGGGCAGAATATTACATTAGCAAATGGAAATATTACAGTTGGCATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment