Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   RB98_RS05670 Genome accession   NZ_CP010461
Coordinates   1075545..1076411 (-) Length   288 a.a.
NCBI ID   WP_002853827.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC013     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1070545..1081411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB98_RS05650 (RB98_05645) metF 1072398..1073246 (+) 849 WP_002892722.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  RB98_RS05655 (RB98_05650) - 1073268..1073459 (-) 192 WP_002933843.1 hypothetical protein -
  RB98_RS05660 (RB98_05655) atpB 1073456..1074136 (-) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  RB98_RS05665 (RB98_05660) radA 1074205..1075545 (-) 1341 WP_002933842.1 DNA repair protein RadA Machinery gene
  RB98_RS05670 (RB98_05665) pilA 1075545..1076411 (-) 867 WP_002853827.1 signal recognition particle-docking protein FtsY Machinery gene
  RB98_RS05675 (RB98_05670) - 1076411..1076968 (-) 558 WP_002933832.1 TlpA disulfide reductase family protein -
  RB98_RS05680 (RB98_05675) - 1077051..1077677 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  RB98_RS05685 (RB98_05680) rny 1077598..1079151 (+) 1554 WP_002853829.1 ribonuclease Y -
  RB98_RS05690 (RB98_05685) - 1079160..1079717 (+) 558 WP_002933819.1 DedA family protein -
  RB98_RS08840 (RB98_05690) - 1079717..1080973 (+) 1257 Protein_1126 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32022.99 Da        Isoelectric Point: 5.2897

>NTDB_id=121652 RB98_RS05670 WP_002853827.1 1075545..1076411(-) (pilA) [Campylobacter jejuni strain CJ677CC013]
MFDFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=121652 RB98_RS05670 WP_002853827.1 1075545..1076411(-) (pilA) [Campylobacter jejuni strain CJ677CC013]
ATGTTTGATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
CAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGGGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATTACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTACAAGAATTTAATGCAAGTGCTTACTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437

Multiple sequence alignment