Detailed information NTG0121634

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: RB98_RS02030
• Genome accession: NZ_CP010461
• Coordinates: 364844..367417 (-)
• Length: 857 a.a.
• NCBI ID: WP_002933378.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain CJ677CC013
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 359844..372417

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RB98_RS02020 (RB98_02025)	maf	362337..362888 (+)	552	WP_002855005.1	septum formation inhibitor Maf	-
RB98_RS02025 (RB98_02030)	pbpA	362885..364816 (+)	1932	WP_002933377.1	penicillin-binding protein 1A	-
RB98_RS02030 (RB98_02035)	clpC	364844..367417 (-)	2574	WP_002933378.1	AAA family ATPase	Regulator
RB98_RS02035 (RB98_02040)	-	367529..367819 (-)	291	WP_002855280.1	metal-sensing transcriptional repressor	-
RB98_RS02040 (RB98_02045)	-	367937..369271 (+)	1335	WP_002856815.1	S41 family peptidase	-
RB98_RS02045 (RB98_02050)	purC	369273..369983 (+)	711	WP_002933381.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
RB98_RS02050 (RB98_02055)	purS	369992..370237 (+)	246	WP_002872631.1	phosphoribosylformylglycinamidine synthase subunit PurS	-
RB98_RS02055 (RB98_02060)	purQ	370239..370911 (+)	673	Protein_411	phosphoribosylformylglycinamidine synthase I	-
RB98_RS02060 (RB98_02065)	-	370883..372079 (+)	1197	WP_002933408.1	SH3 domain-containing protein	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95515.68 Da
• Isoelectric Point: 5.3329

>NTDB_id=121634 RB98_RS02030 WP_002933378.1 364844..367417(-) (clpC) [Campylobacter jejuni strain CJ677CC013]
MANIQDFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDSTSILNQILNKLNISKEALELEIKSRISKLATSSNVN
RENIRFSNELINSLENAKGLMSANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKMDSKTSDETLD
SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVEALAQRIIKKDVPKSLQNKKVIA
LDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILFIDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYR
KYFEKDAALQRRFQPVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAIDLIDEAAAE
LKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELANLKEKQNALNSQFENEKSVFDGISAKKKEID
LLKNEASLAKARGEFQKAAELEYGKIPSLEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQ
KFLEVEKHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKFLFDDEKAMIRFDMSEF
MEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEVEKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILT
SNIASSAIMNLSGKEQEDAVKNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENAAL
LIAKNGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKKA

Nucleotide

• Length: 2574 bp

>NTDB_id=121634 RB98_RS02030 WP_002933378.1 364844..367417(-) (clpC) [Campylobacter jejuni strain CJ677CC013]
ATGGCAAATATACAAGATTTTTTAACTGATAATATGCTTTCAAACCTTGAAAGTGCAGCATCTTTAGCTATACATTCTAA
AAATAATGAAGTTGTACCTTTACATCTTTTATGGGCTTTAAGCGTAGATAGTACAAGTATTTTAAATCAAATTTTAAATA
AATTAAATATTTCCAAAGAAGCCTTAGAACTTGAAATTAAAAGCAGAATTTCAAAACTTGCAACGAGTTCAAATGTAAAC
CGTGAAAATATACGCTTTTCCAATGAACTTATAAATTCATTAGAAAATGCTAAAGGATTAATGAGTGCCAATGGAGATAG
TTATTTAAGTGTGGATACTTGGCTTATAAGTGAAAGTCAAAAAAGTCCTATTAAAGAAATTTTGGCGCAATTTTTAGATT
TAAGAGAATTTCAAAAAGAGCTTGAAAGTCTAAGAGCGGGACGCAAAATGGATAGCAAAACAAGCGATGAAACTTTAGAT
AGCTTAAATAAATTTGGTATAGATTTAACCTTAAAAGCAAGCGAGGGTAAACTTGATCCTGTTATAGGCAGAGAAGAAGA
AATCGAGCGTTTGATGCAAATTTTAATACGCAAAACCAAAAACAACCCTATACTTTTAGGCGAACCAGGCGTAGGAAAAA
CAGCTATAGTAGAAGCTTTAGCACAAAGAATTATTAAAAAAGATGTTCCAAAATCTTTGCAAAATAAAAAAGTTATCGCT
CTTGATATGAGTGCTTTAATTGCAGGTGCAAAATACAGAGGAGAATTTGAAGATAGATTAAAAGCTGTGGTTAATGAAGT
GATAAAAAGTGAAAATATCATTCTTTTTATCGATGAAATTCACACTATAGTAGGGGCTGGAGCAAGTGAAGGCAGCATGG
ATGCGGCAAATATTTTAAAACCTGCTCTTGCAAGAGGTGAACTCCATACCATAGGCGCAACTACTTTAAAAGAATATCGT
AAATATTTTGAAAAAGATGCAGCCTTGCAACGCCGTTTTCAACCTGTAAATGTAGGTGAGCCAAGTGTTAATGAGGCTTT
GGCTATGTTAAGGGGTATAAAAGAAAAGCTTGAAATTCATCATAATGTAACTATAAATGATAGCGCTTTAGTAGCTGCAG
CTAAACTTTCAAAGCGTTATATAGCGGATCGTTTTTTACCTGATAAGGCCATTGATTTAATCGATGAAGCTGCAGCTGAA
CTGAAAATGCAAATTGAAAGTGAACCAAGTTCTTTAAGAAAAGTACGCAAAGATATAGAAACTTTAGAAGTTGAAAATGA
AGCTTTAAAAATGGAAAATGATGAAAAAAATCAAAAAAGACTCGATGAAATCGCAAAAGAACTAGCCAATTTAAAAGAAA
AACAAAATGCCCTAAATTCGCAGTTTGAAAATGAAAAAAGTGTTTTTGATGGTATAAGCGCTAAGAAAAAAGAAATTGAT
TTGCTTAAAAATGAAGCTTCTTTAGCTAAAGCTAGAGGTGAATTTCAAAAAGCAGCCGAGCTAGAGTATGGAAAAATTCC
AAGTCTTGAAAAAGAAGTAGAAATTTTAGAAGATAAATGGAAAAAAATGAGTGAAAATGGAGTTTTACTTAAAAATCAAG
TAGATGAGGATTTGGTTGCTGGAATTTTAAGCAAATGGACGGGTATTAGCGTGCAAAAAATGTTAACTTCTGAAAAACAA
AAATTCTTAGAAGTGGAAAAACATTTAAAAGAAAGTGTCATAGGACAAGATAAGGCCTTAAGTGCTTTAGCTAGAGCCAT
TAAACGTAACAAAGCAGGACTTAATGCGGACAATAAACCTATAGGAAGCTTTTTATTTTTAGGGCCAACAGGGGTAGGAA
AAACACAATCAGCTAAAGCTTTGGCAAAATTTTTATTTGACGATGAAAAAGCAATGATTCGCTTTGATATGAGTGAATTT
ATGGAAAAACATAGTGTTTCAAGACTCTTAGGTGCACCTCCAGGGTACATAGGACATGAAGAAGGTGGAGAGCTTACTGA
AGCTGTGCGAAGAAAACCTTATAGCGTGCTTTTGTTTGATGAAGTTGAAAAAGCACATAAAGATGTATTTAATGTGCTTT
TAGGGATTTTAGATGATGGTAGAGCAACCGATAGCAAAGGTGTAACAGTGGATTTTAAAAATACCATTATCATTTTAACT
TCTAATATTGCCTCAAGCGCTATTATGAATTTAAGCGGAAAAGAACAAGAAGATGCGGTAAAAAATGAGTTAAAAAATTT
CTTTAAACCTGAGTTTTTAAACCGCTTAGATGATATTATCACCTTTAATCCACTTGGAAAAGATGAAGCTTATGAAATAG
TTAAGCTTTTATTTAAAGATTTACAAATGAGCTTAGAAAACAAGGGAATAAAAGCAAGTTTAAGCGAAAATGCAGCCCTT
TTAATCGCTAAAAATGGTTTTGATCCTGATTTTGGTGCTAGACCTTTAAGAAGAGCTATTTATGATCTTATAGAAGATAA
ATTAAGCGATATGATACTTGCTGATGAACTTCATGAAAATGATAGCATTATCATTGATGCAAAAGATGATGAAATAATCA
TCAAAAAAGCTTAA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (204-316)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (765-844)

• AAA domain (Cdc48 subfamily) (AAA_2) (599-759)

• AAA lid domain (AAA_lid_9) (342-444)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-70)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-145)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.407	100	0.434
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.217	100	0.419