Detailed information NTG0121629

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: DF16_RS01950
• Genome accession: NZ_CP007607
• Coordinates: 332798..333925 (-)
• Length: 375 a.a.
• NCBI ID: WP_000470745.1
• Uniprot ID: A0A9W5QA17
• Organism: Bacillus thuringiensis serovar kurstaki str. YBT-1520
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 327798..338925

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DF16_RS01940 (DF16_orf00321)	gyrA	328277..330748 (-)	2472	WP_001282864.1	DNA gyrase subunit A	-
DF16_RS01945 (DF16_orf00322)	gyrB	330837..332759 (-)	1923	WP_000435982.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
DF16_RS01950 (DF16_orf00323)	recF	332798..333925 (-)	1128	WP_000470745.1	DNA replication/repair protein RecF	Machinery gene
DF16_RS01955 (DF16_orf00324)	yaaA	333938..334150 (-)	213	WP_000821364.1	S4 domain-containing protein YaaA	-
DF16_RS01960 (DF16_orf00325)	dnaN	334278..335423 (-)	1146	WP_001212884.1	DNA polymerase III subunit beta	-
DF16_RS01965 (DF16_orf00326)	dnaA	335603..336943 (-)	1341	WP_000428017.1	chromosomal replication initiator protein DnaA	-
DF16_RS01970 (DF16_orf00327)	rpmH	337508..337642 (+)	135	WP_000831901.1	50S ribosomal protein L34	-
DF16_RS01975 (DF16_orf00328)	rnpA	337719..338066 (+)	348	WP_000726621.1	ribonuclease P protein component	-
DF16_RS01980 (DF16_orf00329)	spoIIIJ	338119..338886 (+)	768	WP_000727737.1	YidC family membrane integrase SpoIIIJ	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 43362.67 Da
• Isoelectric Point: 6.6001

>NTDB_id=121629 DF16_RS01950 WP_000470745.1 332798..333925(-) (recF) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRE

Nucleotide

• Length: 1128 bp

>NTDB_id=121629 DF16_RS01950 WP_000470745.1 332798..333925(-) (recF) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGATTTTGGTCAAATAAAGGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGAGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGACGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGTTGGATGATGTTTTATCA
GAATTAGATGATTATCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACTGTAGATTGTGAAATAGATA
GGGAATAA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-348)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	66.576	98.133	0.653