Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   DF16_RS01750 Genome accession   NZ_CP007607
Coordinates   296332..296616 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis serovar kurstaki str. YBT-1520     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 291332..301616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF16_RS01735 (DF16_orf00291) rnmV 292158..292715 (-) 558 WP_000692835.1 ribonuclease M5 -
  DF16_RS01740 (DF16_orf00292) - 292930..293697 (-) 768 WP_000895843.1 TatD family hydrolase -
  DF16_RS01745 (DF16_orf00293) metG 293864..295873 (-) 2010 WP_071686415.1 methionine--tRNA ligase -
  DF16_RS01750 (DF16_orf00294) abrB 296332..296616 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  DF16_RS01755 (DF16_orf00295) rsmI 296637..297512 (-) 876 WP_000267822.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  DF16_RS01760 (DF16_orf00296) - 297481..297771 (-) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  DF16_RS01765 (DF16_orf00297) - 297758..298498 (-) 741 WP_001055369.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  DF16_RS01770 (DF16_orf00298) yabA 298581..298931 (-) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  DF16_RS01775 (DF16_orf00299) - 298946..299773 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  DF16_RS01780 (DF16_orf00300) holB 299779..300762 (-) 984 WP_000169563.1 DNA polymerase III subunit delta' -
  DF16_RS01785 (DF16_orf00301) tmk 300798..301424 (-) 627 WP_000677214.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=121627 DF16_RS01750 WP_000843036.1 296332..296616(+) (abrB) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=121627 DF16_RS01750 WP_000843036.1 296332..296616(+) (abrB) [Bacillus thuringiensis serovar kurstaki str. YBT-1520]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment