Detailed information NTG0121622

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: EG64_RS07205
• Genome accession: NZ_CP007606
• Coordinates: 1481135..1482334 (+)
• Length: 399 a.a.
• NCBI ID: WP_038418227.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BM013B
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1476135..1487334

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EG64_RS08520 (EG64_07525)	-	1478217..1478357 (+)	141	WP_000789926.1	hypothetical protein	-
EG64_RS07195 (EG64_07530)	-	1478350..1479486 (+)	1137	WP_038418224.1	VirB8/TrbF family protein	-
EG64_RS07200 (EG64_07535)	-	1479483..1481138 (+)	1656	WP_038418226.1	TrbG/VirB9 family P-type conjugative transfer protein	-
EG64_RS07205 (EG64_07540)	comB10	1481135..1482334 (+)	1200	WP_038418227.1	DNA type IV secretion system protein ComB10	Machinery gene
EG64_RS07210 (EG64_07545)	-	1482318..1484558 (+)	2241	WP_038418228.1	collagen-like protein	-
EG64_RS07215 (EG64_07550)	-	1484571..1485548 (+)	978	WP_038418230.1	hypothetical protein	-
EG64_RS07220 (EG64_07555)	-	1485565..1485837 (+)	273	WP_038418231.1	hypothetical protein	-
EG64_RS07225 (EG64_07560)	-	1485842..1486786 (+)	945	WP_038418233.1	CpaF/VirB11 family protein	-
EG64_RS07230 (EG64_07565)	-	1486783..1487301 (+)	519	WP_038418235.1	hypothetical protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 44649.41 Da
• Isoelectric Point: 10.1149

>NTDB_id=121622 EG64_RS07205 WP_038418227.1 1481135..1482334(+) (comB10) [Helicobacter pylori strain BM013B]
MKQSLLKKIGLGVGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEKPKKEENPKTITTPQPTAPTTA
NVSTNPIITDYSHLNNNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKQAIKPETEYGVDSFTNL
KYKDIGTNEHKLLRTITADKMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEEEI

Nucleotide

• Length: 1200 bp

>NTDB_id=121622 EG64_RS07205 WP_038418227.1 1481135..1482334(+) (comB10) [Helicobacter pylori strain BM013B]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAGGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAAAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAACAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACAAGCCATTAAGCCTGAGACGGAATACGGCGTGGATAGTTTTACTAATTTA
AAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCCTTTCTCAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGGGTAGAGCGG
TGCTAATCCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAATAACAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAGGGTTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTAATGGTCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGCACAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	54.359	97.744	0.531