Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   EG66_RS00340 Genome accession   NZ_CP007605
Coordinates   62986..64299 (-) Length   437 a.a.
NCBI ID   WP_038419579.1    Uniprot ID   -
Organism   Helicobacter pylori strain BM012B     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 57986..69299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG66_RS00310 (EG66_00335) nadC 58449..59270 (-) 822 WP_038419573.1 carboxylating nicotinate-nucleotide diphosphorylase -
  EG66_RS00315 (EG66_00340) nadA 59270..60280 (-) 1011 WP_038419575.1 quinolinate synthase NadA -
  EG66_RS00320 (EG66_00345) - 60270..61073 (-) 804 WP_038419577.1 phosphatidylserine decarboxylase -
  EG66_RS00325 (EG66_00350) - 61067..61573 (-) 507 WP_000953105.1 DUF6115 domain-containing protein -
  EG66_RS00330 (EG66_00355) - 61586..62080 (-) 495 WP_049820994.1 hypothetical protein -
  EG66_RS00335 (EG66_00360) mqnP 62073..62915 (-) 843 WP_236620126.1 menaquinone biosynthesis prenyltransferase MqnP -
  EG66_RS00340 (EG66_00365) comEC/comE3 62986..64299 (-) 1314 WP_038419579.1 ComEC/Rec2 family competence protein Machinery gene
  EG66_RS00345 (EG66_00370) - 64296..65762 (-) 1467 WP_038419581.1 replicative DNA helicase -
  EG66_RS00350 (EG66_00375) - 65773..67173 (-) 1401 WP_038419582.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  EG66_RS00355 (EG66_00380) crdS 67176..68378 (-) 1203 WP_080280257.1 copper-sensing histidine kinase CrdS -
  EG66_RS00360 (EG66_00385) crdR 68344..68985 (-) 642 WP_038419584.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50213.28 Da        Isoelectric Point: 9.9286

>NTDB_id=121589 EG66_RS00340 WP_038419579.1 62986..64299(-) (comEC/comE3) [Helicobacter pylori strain BM012B]
MKDKTFQGAFELLTTPKEYLVCGVILSLLLAINLYLEYLNHQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLMRKHNFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSLQAISLS
ALVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAMGLGSLLDHFLSMPLTIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=121589 EG66_RS00340 WP_038419579.1 62986..64299(-) (comEC/comE3) [Helicobacter pylori strain BM012B]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACCTGGTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGATTAACCTTTATTTAGAATACTTGAATCACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCCTGTTGCAATACCCTAAAACTAAAGATCAAAAAACTTATTTTGTCTTAAAACTCCAATCTAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCCTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTACTCTTTTTCTTTAATGCGAAAACACAATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTATACCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCACTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTTTCGCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTACTAGATTTTTTACCCTCTTTTTTCAGGGCA
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTCTTCAAGCCATAAGCTTAAGT
GCGCTGGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCGATGGGTTTGGGGTCTTTGTTGGATCATT
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.881

100

0.959

Multiple sequence alignment