Detailed information NTG0121579

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: EG63_RS07200
• Genome accession: NZ_CP007604
• Coordinates: 1481156..1482355 (+)
• Length: 399 a.a.
• NCBI ID: WP_038418227.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BM013A
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1476156..1487355

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EG63_RS08510 (EG63_07520)	-	1478238..1478378 (+)	141	WP_000789926.1	hypothetical protein	-
EG63_RS07190 (EG63_07525)	-	1478371..1479507 (+)	1137	WP_038418224.1	VirB8/TrbF family protein	-
EG63_RS07195 (EG63_07530)	-	1479504..1481159 (+)	1656	WP_038418226.1	TrbG/VirB9 family P-type conjugative transfer protein	-
EG63_RS07200 (EG63_07535)	comB10	1481156..1482355 (+)	1200	WP_038418227.1	DNA type IV secretion system protein ComB10	Machinery gene
EG63_RS07205 (EG63_07540)	-	1482339..1484579 (+)	2241	WP_038418228.1	collagen-like protein	-
EG63_RS07210 (EG63_07545)	-	1484592..1485569 (+)	978	WP_038418230.1	hypothetical protein	-
EG63_RS07215 (EG63_07550)	-	1485586..1485858 (+)	273	WP_038418231.1	hypothetical protein	-
EG63_RS07220 (EG63_07555)	-	1485863..1486807 (+)	945	WP_038418233.1	CpaF/VirB11 family protein	-
EG63_RS07225 (EG63_07560)	-	1486804..1487322 (+)	519	WP_038418235.1	hypothetical protein	-

Sequence

Protein

• Length: 399 a.a.
• Molecular weight: 44649.41 Da
• Isoelectric Point: 10.1149

>NTDB_id=121579 EG63_RS07200 WP_038418227.1 1481156..1482355(+) (comB10) [Helicobacter pylori strain BM013A]
MKQSLLKKIGLGVGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEKPKKEENPKTITTPQPTAPTTA
NVSTNPIITDYSHLNNNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKQAIKPETEYGVDSFTNL
KYKDIGTNEHKLLRTITADKMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEEEI

Nucleotide

• Length: 1200 bp

>NTDB_id=121579 EG63_RS07200 WP_038418227.1 1481156..1482355(+) (comB10) [Helicobacter pylori strain BM013A]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAGGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAAAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCC
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAACAATCTCAACAAGCAAAATGACACCATCACGCA
TTTGCAACAAGTTTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACAAGCCATTAAGCCTGAGACGGAATACGGCGTGGATAGTTTTACTAATTTA
AAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCCTTTCTCAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGGGTAGAGCGG
TGCTAATCCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAATAACAATCAAATCGGGCAATACCGCTTAAACATTGCT
TGGACTAGAATTATCACCCCTCAAGGCATAAATATCATGCTCACTAATGCAAGGGGGGCTGATGTGAAGGGTTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTAATGGTCTTT
TAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGCACAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAAGAAATCTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (175-365)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	54.359	97.744	0.531