Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   EG65_RS07190 Genome accession   NZ_CP007603
Coordinates   1503417..1503992 (-) Length   191 a.a.
NCBI ID   WP_026938058.1    Uniprot ID   -
Organism   Helicobacter pylori J166     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1498417..1508992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG65_RS08600 (EG65_07580) - 1500087..1500644 (-) 558 WP_027327808.1 restriction endonuclease subunit S -
  EG65_RS08605 (EG65_07585) - 1500671..1501348 (-) 678 WP_027327807.1 restriction endonuclease subunit S -
  EG65_RS07185 (EG65_07590) - 1501345..1503384 (-) 2040 WP_026938057.1 HsdM family class I SAM-dependent methyltransferase -
  EG65_RS07190 (EG65_07595) comFC 1503417..1503992 (-) 576 WP_026938058.1 ComF family protein Machinery gene
  EG65_RS07195 (EG65_07600) tmk 1503980..1504555 (-) 576 WP_026938059.1 dTMP kinase -
  EG65_RS07200 (EG65_07605) coaD 1504557..1505030 (-) 474 WP_026938060.1 pantetheine-phosphate adenylyltransferase -
  EG65_RS07205 (EG65_07610) - 1505030..1505593 (-) 564 WP_000780111.1 UbiX family flavin prenyltransferase -
  EG65_RS07210 (EG65_07615) flgA 1505603..1506259 (-) 657 WP_000697649.1 flagellar basal body P-ring formation chaperone FlgA -
  EG65_RS07215 (EG65_07620) uvrD 1506256..1508301 (-) 2046 WP_000505301.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21341.90 Da        Isoelectric Point: 8.6712

>NTDB_id=121556 EG65_RS07190 WP_026938058.1 1503417..1503992(-) (comFC) [Helicobacter pylori J166]
MRCLTCLKLSFKPLCPNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGTLRATNTISYAGKSLEFRTNNPRDFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=121556 EG65_RS07190 WP_026938058.1 1503417..1503992(-) (comFC) [Helicobacter pylori J166]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTACAAGAAAAAGGC
TTGAATATTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACTAACAACCCACGGGATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.764

100

0.948

Multiple sequence alignment