Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   EG65_RS05100 Genome accession   NZ_CP007603
Coordinates   1084049..1085362 (-) Length   437 a.a.
NCBI ID   WP_026938658.1    Uniprot ID   -
Organism   Helicobacter pylori J166     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1079049..1090362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG65_RS05070 (EG65_05290) nadC 1079514..1080335 (-) 822 WP_026938653.1 carboxylating nicotinate-nucleotide diphosphorylase -
  EG65_RS05075 (EG65_05295) nadA 1080335..1081345 (-) 1011 WP_026938654.1 quinolinate synthase NadA -
  EG65_RS05080 (EG65_05300) - 1081335..1082138 (-) 804 WP_026938655.1 phosphatidylserine decarboxylase -
  EG65_RS05085 (EG65_05305) - 1082132..1082638 (-) 507 WP_026938656.1 DUF6115 domain-containing protein -
  EG65_RS05090 (EG65_05310) - 1082651..1083145 (-) 495 WP_001908645.1 hypothetical protein -
  EG65_RS05095 (EG65_05315) mqnP 1083138..1084022 (-) 885 WP_026938657.1 menaquinone biosynthesis prenyltransferase MqnP -
  EG65_RS05100 (EG65_05320) comEC/comE3 1084049..1085362 (-) 1314 WP_026938658.1 ComEC/Rec2 family competence protein Machinery gene
  EG65_RS05105 (EG65_05325) - 1085359..1086825 (-) 1467 WP_026938659.1 replicative DNA helicase -
  EG65_RS05110 (EG65_05330) - 1086836..1088236 (-) 1401 WP_026938660.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  EG65_RS05115 (EG65_05335) crdS 1088239..1089441 (-) 1203 WP_080279790.1 copper-sensing histidine kinase CrdS -
  EG65_RS05120 (EG65_05340) crdR 1089407..1090048 (-) 642 WP_026938662.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50316.30 Da        Isoelectric Point: 9.8572

>NTDB_id=121553 EG65_RS05100 WP_026938658.1 1084049..1085362(-) (comEC/comE3) [Helicobacter pylori J166]
MKDKTFQGAFELLTTPKEYLWCGVILSLLLVLNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHILSMPLTIPTISIPSPLWLLGVHLFLT
ILSTRFFKVYLSMNVLSVGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=121553 EG65_RS05100 WP_026938658.1 1084049..1085362(-) (comEC/comE3) [Helicobacter pylori J166]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTATGGTGTGGGGTTATTTTAAG
CCTTTTGTTGGTGCTTAATCTTTATTTGGAATACTTGAATTACCAAAAACTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTATTACAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAACCCTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTTAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTACTAGATTTTTTACCCTCTTTTTTCAGGGCA
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCGTTTCAAGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTATCGCACATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTGGGGTCTTTATTGGATCATA
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTAAGCACGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGTGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTGGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.652

100

0.957

Multiple sequence alignment