Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   EG65_RS03025 Genome accession   NZ_CP007603
Coordinates   630655..630945 (-) Length   96 a.a.
NCBI ID   WP_000661512.1    Uniprot ID   -
Organism   Helicobacter pylori J166     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 625655..635945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG65_RS03000 (EG65_03145) - 626319..627455 (-) 1137 WP_026938139.1 VirB8/TrbF family protein -
  EG65_RS08490 (EG65_03150) - 627448..627588 (-) 141 WP_000789927.1 hypothetical protein -
  EG65_RS03010 (EG65_03155) - 627585..630149 (-) 2565 WP_026938140.1 VirB4 family type IV secretion/conjugal transfer ATPase -
  EG65_RS03015 (EG65_03160) - 630149..630370 (-) 222 WP_001170056.1 hypothetical protein -
  EG65_RS03020 (EG65_03165) comB3 630382..630645 (-) 264 WP_001177721.1 hypothetical protein Machinery gene
  EG65_RS03025 (EG65_03170) comB2 630655..630945 (-) 291 WP_000661512.1 TrbC/VirB2 family protein Machinery gene
  EG65_RS03030 (EG65_03175) - 630942..631421 (-) 480 WP_026938141.1 hypothetical protein -
  EG65_RS03035 (EG65_03180) - 631418..631642 (-) 225 WP_000188957.1 hypothetical protein -
  EG65_RS03040 (EG65_03185) - 631645..632433 (-) 789 WP_026938142.1 hypothetical protein -
  EG65_RS03045 (EG65_03190) - 632506..632892 (+) 387 WP_000414158.1 hypothetical protein -
  EG65_RS03050 (EG65_03195) - 632903..633883 (+) 981 WP_001130744.1 hypothetical protein -
  EG65_RS03055 (EG65_03200) - 633941..634255 (+) 315 WP_026938143.1 YkgJ family cysteine cluster protein -
  EG65_RS03060 (EG65_03205) ftsY 634264..635157 (-) 894 WP_000481597.1 signal recognition particle-docking protein FtsY -
  EG65_RS03065 (EG65_03210) - 635164..635721 (-) 558 WP_026938144.1 hypothetical protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 11002.26 Da        Isoelectric Point: 10.7837

>NTDB_id=121551 EG65_RS03025 WP_000661512.1 630655..630945(-) (comB2) [Helicobacter pylori J166]
MKELRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLQSPTGKGILMIIFIAIGIFVWKNLDRWKEILLTILGVVLGTLIF
FKAPNLAQWFMTSVGN

Nucleotide


Download         Length: 291 bp        

>NTDB_id=121551 EG65_RS03025 WP_000661512.1 630655..630945(-) (comB2) [Helicobacter pylori J166]
ATGAAAGAATTAAGACATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATAGCATTGAGCAACAACTCCAAAGCCCTACAGGTAAGGGCATTTTAATGATTATATTCATTGCTATTGGTA
TTTTTGTGTGGAAAAACTTAGATAGATGGAAAGAAATCTTATTAACTATTTTAGGAGTTGTTTTAGGAACGCTGATATTT
TTTAAAGCCCCAAACTTAGCTCAATGGTTTATGACTAGTGTTGGTAACTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

59.77

90.625

0.542

Multiple sequence alignment