Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | EG65_RS03020 | Genome accession | NZ_CP007603 |
| Coordinates | 630382..630645 (-) | Length | 87 a.a. |
| NCBI ID | WP_001177721.1 | Uniprot ID | B3VT61 |
| Organism | Helicobacter pylori J166 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 625382..635645
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG65_RS03000 (EG65_03145) | - | 626319..627455 (-) | 1137 | WP_026938139.1 | VirB8/TrbF family protein | - |
| EG65_RS08490 (EG65_03150) | - | 627448..627588 (-) | 141 | WP_000789927.1 | hypothetical protein | - |
| EG65_RS03010 (EG65_03155) | - | 627585..630149 (-) | 2565 | WP_026938140.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| EG65_RS03015 (EG65_03160) | - | 630149..630370 (-) | 222 | WP_001170056.1 | hypothetical protein | - |
| EG65_RS03020 (EG65_03165) | comB3 | 630382..630645 (-) | 264 | WP_001177721.1 | hypothetical protein | Machinery gene |
| EG65_RS03025 (EG65_03170) | comB2 | 630655..630945 (-) | 291 | WP_000661512.1 | TrbC/VirB2 family protein | Machinery gene |
| EG65_RS03030 (EG65_03175) | - | 630942..631421 (-) | 480 | WP_026938141.1 | hypothetical protein | - |
| EG65_RS03035 (EG65_03180) | - | 631418..631642 (-) | 225 | WP_000188957.1 | hypothetical protein | - |
| EG65_RS03040 (EG65_03185) | - | 631645..632433 (-) | 789 | WP_026938142.1 | hypothetical protein | - |
| EG65_RS03045 (EG65_03190) | - | 632506..632892 (+) | 387 | WP_000414158.1 | hypothetical protein | - |
| EG65_RS03050 (EG65_03195) | - | 632903..633883 (+) | 981 | WP_001130744.1 | hypothetical protein | - |
| EG65_RS03055 (EG65_03200) | - | 633941..634255 (+) | 315 | WP_026938143.1 | YkgJ family cysteine cluster protein | - |
| EG65_RS03060 (EG65_03205) | ftsY | 634264..635157 (-) | 894 | WP_000481597.1 | signal recognition particle-docking protein FtsY | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9946.74 Da Isoelectric Point: 5.7206
>NTDB_id=121550 EG65_RS03020 WP_001177721.1 630382..630645(-) (comB3) [Helicobacter pylori J166]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSSFVPFVMTPWLDILNSLMLYACFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSSFVPFVMTPWLDILNSLMLYACFLLVFSIAEFFDEDISDILIAHSKIKT
KSNSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=121550 EG65_RS03020 WP_001177721.1 630382..630645(-) (comB3) [Helicobacter pylori J166]
ATGCAATTAGTCGGTATTTCAGTTTCTAATCTCAAAGAAATCAGTTCCAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTGCTCTCAAGTTTTGTGCCATTTGTAATGACACCTTGGCTAGATATATTGAACTCTCTTATGCTGTATGCGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTTTTTGATGAAGATATAAGCGACATTTTAATCGCTCATTCCAAGATTAAAACC
AAATCTAATTCATTTTATGCTTAA
ATGCAATTAGTCGGTATTTCAGTTTCTAATCTCAAAGAAATCAGTTCCAAAGAAAAGTTTCTTTGGCTCAATGCTAAGAG
CTTTTTGCTCTCAAGTTTTGTGCCATTTGTAATGACACCTTGGCTAGATATATTGAACTCTCTTATGCTGTATGCGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTTTTTGATGAAGATATAAGCGACATTTTAATCGCTCATTCCAAGATTAAAACC
AAATCTAATTCATTTTATGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
58.621 |
100 |
0.586 |