Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | EG65_RS00095 | Genome accession | NZ_CP007603 |
| Coordinates | 14211..14474 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584958.1 | Uniprot ID | D7FG60 |
| Organism | Helicobacter pylori J166 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 9211..19474
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG65_RS00070 (EG65_00080) | groES | 9510..9866 (-) | 357 | WP_000671936.1 | co-chaperone GroES | - |
| EG65_RS00075 (EG65_00085) | dnaG | 10140..11819 (+) | 1680 | WP_026938523.1 | DNA primase | - |
| EG65_RS00080 (EG65_00090) | - | 11816..12868 (+) | 1053 | WP_026938522.1 | MnmA/TRMU family protein | - |
| EG65_RS00085 (EG65_00095) | - | 12958..13785 (+) | 828 | WP_026938521.1 | DUF5718 family protein | - |
| EG65_RS00090 (EG65_00100) | comB2 | 13930..14211 (+) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| EG65_RS00095 (EG65_00105) | comB3 | 14211..14474 (+) | 264 | WP_000584958.1 | hypothetical protein | Machinery gene |
| EG65_RS00100 (EG65_00110) | comB4 | 14476..16839 (+) | 2364 | WP_026938520.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| EG65_RS00105 (EG65_00115) | - | 17144..18484 (+) | 1341 | WP_026938519.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10066.12 Da Isoelectric Point: 9.7585
>NTDB_id=121536 EG65_RS00095 WP_000584958.1 14211..14474(+) (comB3) [Helicobacter pylori J166]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKYYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKYYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=121536 EG65_RS00095 WP_000584958.1 14211..14474(+) (comB3) [Helicobacter pylori J166]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATATTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGTTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATATTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
98.851 |
100 |
0.989 |