Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   EG65_RS00090 Genome accession   NZ_CP007603
Coordinates   13930..14211 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori J166     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8930..19211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG65_RS00070 (EG65_00080) groES 9510..9866 (-) 357 WP_000671936.1 co-chaperone GroES -
  EG65_RS00075 (EG65_00085) dnaG 10140..11819 (+) 1680 WP_026938523.1 DNA primase -
  EG65_RS00080 (EG65_00090) - 11816..12868 (+) 1053 WP_026938522.1 MnmA/TRMU family protein -
  EG65_RS00085 (EG65_00095) - 12958..13785 (+) 828 WP_026938521.1 DUF5718 family protein -
  EG65_RS00090 (EG65_00100) comB2 13930..14211 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  EG65_RS00095 (EG65_00105) comB3 14211..14474 (+) 264 WP_000584958.1 hypothetical protein Machinery gene
  EG65_RS00100 (EG65_00110) comB4 14476..16839 (+) 2364 WP_026938520.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  EG65_RS00105 (EG65_00115) - 17144..18484 (+) 1341 WP_026938519.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=121535 EG65_RS00090 WP_001272686.1 13930..14211(+) (comB2) [Helicobacter pylori J166]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=121535 EG65_RS00090 WP_001272686.1 13930..14211(+) (comB2) [Helicobacter pylori J166]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment