Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ayp1020_RS11080 Genome accession   NZ_CP007601
Coordinates   2332891..2334258 (+) Length   455 a.a.
NCBI ID   WP_047797029.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. capitis strain AYP1020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2327891..2339258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ayp1020_RS11060 (AYP1020_2270) - 2328039..2328500 (+) 462 WP_002433457.1 CtsR family transcriptional regulator -
  ayp1020_RS11065 (AYP1020_2271) - 2328520..2329083 (+) 564 WP_002433344.1 UvrB/UvrC motif-containing protein -
  ayp1020_RS11070 (AYP1020_2272) - 2329076..2330080 (+) 1005 WP_002433454.1 protein arginine kinase -
  ayp1020_RS11075 (AYP1020_2273) - 2330095..2332548 (+) 2454 WP_047797028.1 ATP-dependent Clp protease ATP-binding subunit -
  ayp1020_RS11080 (AYP1020_2274) radA 2332891..2334258 (+) 1368 WP_047797029.1 DNA repair protein RadA Machinery gene
  ayp1020_RS11085 (AYP1020_2275) - 2334416..2335480 (+) 1065 WP_161799216.1 PIN/TRAM domain-containing protein -
  ayp1020_RS11090 (AYP1020_2276) gltX 2335889..2337343 (+) 1455 WP_002433261.1 glutamate--tRNA ligase -
  ayp1020_RS11095 (AYP1020_2277) cysE 2337764..2338393 (+) 630 WP_171002259.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49891.30 Da        Isoelectric Point: 6.8755

>NTDB_id=121533 ayp1020_RS11080 WP_047797029.1 2332891..2334258(+) (radA) [Staphylococcus capitis subsp. capitis strain AYP1020]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKSKEAAGKVQKLDNVKHESTPRILTDSKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQNKNVLYITGEESINQTKLRADRLEEDSSQLNVLAETDLEVIHQTVK
DERPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMDIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVPTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDKAVDGLDCFVGEVGLTGEVR
RVSRIEQRVQESAKLGFKRAIIPQTNIGGWTFPEGIQVIGVSSVHEALKYALHSS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=121533 ayp1020_RS11080 WP_047797029.1 2332891..2334258(+) (radA) [Staphylococcus capitis subsp. capitis strain AYP1020]
GTGGCCAAGAAAAAAGTAATATTTGAGTGTATGGCATGTGGCTATCAATCTCCTAAATGGATGGGGAAATGTCCAAACTG
TGGTGCATGGAACCAGATGGAAGAAATTGTAGAGAAAGCTGCAAACCCTAAACATGGAGTGAAATCTAAAGAAGCAGCAG
GAAAAGTTCAAAAATTGGATAATGTTAAACATGAATCTACCCCTAGAATTCTAACGGATTCTAAAGAATTTAACAGAGTC
CTTGGTGGAGGGATTGTCAGTGGATCACTCGTACTTATAGGTGGCGATCCTGGTATAGGGAAGTCTACGTTGCTTCTTCA
AATATGTGCGGCATTATCTCAAAATAAGAATGTCTTATATATTACAGGTGAGGAATCTATCAATCAGACTAAACTACGTG
CCGACCGCTTAGAAGAAGATTCTAGTCAACTCAATGTATTAGCAGAGACTGATTTAGAAGTCATTCATCAAACAGTTAAG
GATGAACGCCCAGATTTACTTGTAGTAGATTCAATTCAAACTATTTATCATCCTGAAATCAGTTCTGCACCGGGTTCTGT
ATCTCAAGTAAGAGAAAGTACCCAAAGTCTAATGAATATCGCAAAGCAAATGGATATCGCAACGTTCATCGTCGGTCATG
TTACGAAAGAAGGACAAATTGCCGGTCCAAGATTACTTGAACATATGGTGGATACCGTGCTTTACTTTGAAGGTGATGAA
CATCATGCTTATCGAATTTTACGTGCGGTTAAAAACCGTTTTGGCTCCACGAATGAGATGGGTATTTTCGAAATGAAGCA
AAGTGGTTTGAAAGGTGTCTTAAATCCGTCTGAAATGTTCTTAGAAGAACGTTCTACAAACGTGCCAGGTTCAACAATTG
TACCGACTATGGAAGGTACAAGACCACTATTAATAGAGGTCCAAGCGTTAGTCACACCGACCACTTTCAACAATCCAAGA
CGTATGGCTACGGGCATAGATCATAATCGATTAAGTTTGCTTATGGCAGTTTTAGAGAAGAAGGAGAATTATTTACTTCA
ACAACAAGATGCTTATATCAAAGTTGCTGGTGGTGTGAAATTAACAGAACCAGCCGTTGACTTAAGTATTATTGTTGCGA
CAGCTTCAAGCTTTAAGGATAAAGCGGTAGACGGTTTAGATTGCTTTGTTGGAGAGGTTGGTCTAACAGGTGAAGTTCGA
CGTGTGTCACGCATTGAACAACGCGTGCAAGAGTCGGCTAAACTTGGATTCAAACGAGCGATTATACCTCAAACTAATAT
TGGTGGGTGGACTTTCCCGGAAGGTATTCAAGTCATAGGAGTGTCTTCTGTGCATGAGGCTTTAAAATATGCGCTTCATT
CTTCATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-218)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.228

100

0.664
  radA Streptococcus pneumoniae Rx1

60.802

98.681

0.6
  radA Streptococcus pneumoniae D39

60.802

98.681

0.6
  radA Streptococcus pneumoniae R6

60.802

98.681

0.6
  radA Streptococcus pneumoniae TIGR4

60.802

98.681

0.6
  radA Streptococcus mitis NCTC 12261

60.802

98.681

0.6
  radA Streptococcus mitis SK321

60.802

98.681

0.6

Multiple sequence alignment